Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1481
         (614 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22790.1 68416.m02873 kinase interacting family protein simil...    32   0.26 
At2g23030.1 68415.m02746 protein kinase, putative similar to pro...    29   1.9  
At2g35990.1 68415.m04417 hypothetical protein contains Pfam prof...    27   7.5  
At2g17440.1 68415.m02012 leucine-rich repeat family protein cont...    27   7.5  
At2g42180.1 68415.m05220 expressed protein                             27   9.9  

>At3g22790.1 68416.m02873 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1694

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 20   DVESLLQNKTQTNIDKARLLLQDLASRV 103
            DV SL QN   TN+D   +LLQD+ +R+
Sbjct: 1350 DVRSLEQNALSTNLDNGIVLLQDMKTRI 1377


>At2g23030.1 68415.m02746 protein kinase, putative similar to
           protein kinase 3 [Glycine max] GP|310582|gb|AAB68961
          Length = 339

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = -1

Query: 566 PQRVHQLVRVVCEPRHMGELYKPIVYIGTD 477
           PQRV +++++V E R +  L +P+  +G+D
Sbjct: 288 PQRVEEIMKIVGEARTIPNLSRPVESLGSD 317


>At2g35990.1 68415.m04417 hypothetical protein contains Pfam profile
           PF03641: decarboxylase family protein
          Length = 231

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = -2

Query: 577 IMNIHSEYTNSFESFVNRVIWENSTNPSFT 488
           ++ +  EY    + FV++++W+N+T+ +FT
Sbjct: 197 LLQLLEEYVPKHDDFVSKMVWDNTTD-AFT 225


>At2g17440.1 68415.m02012 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeats
          Length = 526

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/84 (21%), Positives = 41/84 (48%)
 Frame = -2

Query: 577 IMNIHSEYTNSFESFVNRVIWENSTNPSFTSAQTLPKKRKS*LRFLSFSK*RSLHQTRLC 398
           I N+  E  N  E+ +++++  +S+           + +KS +RF      +S  QTR  
Sbjct: 34  IQNVEKEDRNRLEA-IDKLVKTSSSEVPLELFNVFKEMKKSLVRF------QSTEQTREA 86

Query: 397 SLVRRIKTLYIVISTFIKR*ILCV 326
           + +  ++++++V    I+R   C+
Sbjct: 87  TKILDLESVHVVFDELIQRASFCI 110


>At2g42180.1 68415.m05220 expressed protein
          Length = 166

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 327 THRI*RLINVLITMYSVLIRRTSEQRRVWCKLLYFENERNLN*DFLFFG 473
           TH + RL+  L    SVLI  +   ++    ++++  + ++N   +FFG
Sbjct: 24  THSLYRLLRSLSRARSVLIEISKHNKKRLFMMMFYTTKSSMNQHNIFFG 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,177,179
Number of Sequences: 28952
Number of extensions: 235413
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)