Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1480
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    27   1.8  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   5.5  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   5.5  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   5.5  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.5  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    25   7.2  

>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 285 SSLLITSFSACHICASFW*PVCL 217
           S+L+  S  AC  C S+W P CL
Sbjct: 415 SALVSQSILACDYCNSYWHPDCL 437


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 346 RGSSPTGSVNVRQGGAATPS--GPPRQARSSSHHADASNPTSSSRHSSLYVNFLE*C 510
           + S P+ SV+V      TP+   P  ++ +S     +S+P +SS  +S    F+E C
Sbjct: 2   QSSIPSVSVSVASPAMETPTKASPDSKSPNSVGAIPSSSPLASSTKASTSTPFVENC 58


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 352 SSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHS 480
           SS + S +     +++ S P   + SSSH + +S+ +SSS  S
Sbjct: 190 SSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSS 232


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
 Frame = +3

Query: 399 PVRTSET----SPVQLTPRRRFKPYI 464
           P RT  T    SP+ +TP R F+PY+
Sbjct: 54  PTRTEITPVTLSPIPITPVREFQPYL 79


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 352 SSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSS 483
           SSP+ S +     + + S     ++SSS  + +S  +SSS  SS
Sbjct: 163 SSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSS 206


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 647 QLFMSTPQMKTSHILVSTYKNPKSHLSIRFMHNPLGI 537
           ++F +TP  K   +  +T  N    +  +FM NPL I
Sbjct: 221 EVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEI 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,804
Number of Sequences: 5004
Number of extensions: 37412
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)