Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1480
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0068 + 17635693-17637204 31 1.1
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417... 29 2.4
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 29 3.2
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 29 3.2
10_02_0079 + 5016115-5016936 29 4.3
02_04_0281 + 21563588-21563696,21565053-21565708,21565793-215658... 29 4.3
07_01_0975 + 8223269-8224354 28 5.6
12_02_1012 - 25281820-25281987,25282337-25282409,25283370-252834... 28 7.5
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 28 7.5
06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850 28 7.5
07_01_1175 - 11116556-11116660,11117124-11117216 27 9.9
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 27 9.9
05_01_0465 + 3696440-3696730,3698758-3699282 27 9.9
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 27 9.9
01_01_0886 - 6970112-6970225,6970357-6970473,6970567-6970635,697... 27 9.9
>05_04_0068 + 17635693-17637204
Length = 503
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 367 SVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRH 477
S+ V G +PS R ARSSS++ +S+ +SSSRH
Sbjct: 26 SLAVDSAGGWSPSSSSRSARSSSYY--SSSKSSSSRH 60
>02_01_0567 -
4168164-4168250,4168672-4168828,4168951-4169090,
4170318-4170456,4170562-4170830,4170914-4171000,
4171259-4171327,4171427-4171455,4171544-4171950,
4172906-4172977,4173150-4173221,4173299-4173370,
4173454-4173519,4173717-4173785,4173866-4173995,
4174846-4174975
Length = 664
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 316 FVSRFGPGC*RGSSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSS 483
F + P S+PTGS + + + SG P + S S+ + S SS SS
Sbjct: 210 FNTSIAPSASPSSTPTGSTPTQTPSSPSSSGTPSPSSSPSNSSGGSTARDSSSPSS 265
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/69 (33%), Positives = 31/69 (44%)
Frame = +1
Query: 280 RGAVSFARGSAGFVSRFGPGC*RGSSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNP 459
R S S+G + R PG SSP + Q AAT G ARS S A++P
Sbjct: 260 RSRPSLTAPSSGALQRATPGAAGTSSPRSTAPACQQPAATRRGANSVARSGS-TPRAASP 318
Query: 460 TSSSRHSSL 486
+ +R S+
Sbjct: 319 SPRARDVSI 327
>01_06_1446 -
37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 355 SPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPT 462
SP G V ++ G A S PPR +D S+ T
Sbjct: 573 SPLGGVQMKVGNARAKSAPPRAVSIKEDSSDCSSST 608
>10_02_0079 + 5016115-5016936
Length = 273
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 358 PT-GSVNVRQGGAATPSGPPRQARSSSHHAD-ASNPTSSSRHSS 483
PT S ++ GG A P+ PP R++ A+ A+NP S + HS+
Sbjct: 4 PTESSASIASGGLAAPA-PPTNPRNAIPAANPAANPISGAAHSA 46
>02_04_0281 +
21563588-21563696,21565053-21565708,21565793-21565879,
21566487-21567461,21567640-21567786
Length = 657
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 406 GPPRQARSSSHHADASNPTSSSRHSS 483
G R SS HH D ++ TSSSR SS
Sbjct: 43 GSSRNHSSSGHHRDQNSRTSSSRISS 68
>07_01_0975 + 8223269-8224354
Length = 361
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 298 ARGSAGFVSRFGPGC*RGSSPTGSVNVRQGGAATPSGP-PRQARSSSHHADASNPTSSSR 474
A G + + GP G SP+G+ +G ++ S P + SSS ADA P +S+
Sbjct: 299 AEGPSSSGAASGPA--EGPSPSGAAGPAEGPSSYGSTEGPSPSPSSSGSADAPGPGASAP 356
Query: 475 HSSLY 489
S Y
Sbjct: 357 DSEEY 361
>12_02_1012 -
25281820-25281987,25282337-25282409,25283370-25283420,
25283523-25283932,25284083-25284413,25285340-25285439,
25287091-25287370
Length = 470
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 365 PVGLEPR*QPGPKRETKPALPRANETAPRS*SPHSRLV 252
PV P + GP R KPA P A + S S H +L+
Sbjct: 324 PVATVPFKRKGPGRGRKPAQPPAAAVSSHSASKHEKLL 361
>07_03_0965 - 22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 5/76 (6%)
Frame = +1
Query: 283 GAVSFARGSAGFVSRFGPGC*RGSSPTGSVNVRQGGAATPSG-----PPRQARSSSHHAD 447
G V+ G +SR SP+ SV+ GG+ SG PP S
Sbjct: 1368 GPVTNMSTGGGDLSRSSNAPVASGSPSNSVSKSTGGSPPASGSAKGVPPAVQLPSPQQQS 1427
Query: 448 ASNPTSSSRHSSLYVN 495
A NP S+S S N
Sbjct: 1428 AKNPASTSGAKSAPTN 1443
>06_01_0976 - 7576334-7579090,7581001-7581150,7581236-7581850
Length = 1173
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 352 SSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSSLYV 492
S P G ++R G ++P+ R+ H+ +S+ +SSSR LYV
Sbjct: 20 SKPKGHHHLRSKGLSSPAASRRRGA----HSASSSASSSSRRRVLYV 62
>07_01_1175 - 11116556-11116660,11117124-11117216
Length = 65
Score = 27.5 bits (58), Expect = 9.9
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = -1
Query: 389 PPWRTFTEPVGLEPR*QPGPK-----RETKPALPRANETAPRS*SPHSRLVIFVRLFGDR 225
P WR+ + G E R + G K R TKP RA TA R+ + +S R GDR
Sbjct: 2 PTWRSSLQRGGKEGRGKRGAKEVRRKRRTKPMASRAATTAARAGNDNSGKPREGRTGGDR 61
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 400 PSGPPRQARSSSHHADASNPTSSSRHSS 483
P PP ++++HHA A P + R SS
Sbjct: 28 PPPPPPLVQAAAHHAAAGQPETPRRRSS 55
>05_01_0465 + 3696440-3696730,3698758-3699282
Length = 271
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 379 RQGGAATPSGPPRQARSSSHHADASNPTSSSRHS 480
RQGG A P PP + SSS + A+ T+ + HS
Sbjct: 39 RQGGLA-PEPPPPRPSSSSGRSAAAQATAMTIHS 71
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 27.5 bits (58), Expect = 9.9
Identities = 26/88 (29%), Positives = 33/88 (37%)
Frame = +1
Query: 223 NRSPKRRTNMTSRE*GD*ERGAVSFARGSAGFVSRFGPGC*RGSSPTGSVNVRQGGAATP 402
++S +RR SR R A +R SA P SS + S VR AA
Sbjct: 76 SQSTERRPATPSRLSPGGSRAAAPSSRISAPTSPSSAPSSPSSSSSSSSTPVRDAVAAES 135
Query: 403 SGPPRQARSSSHHADASNPTSSSRHSSL 486
PR+ D P+ S SSL
Sbjct: 136 QSAPRRLAGGRAPPDGLWPSMRSLSSSL 163
>01_01_0886 -
6970112-6970225,6970357-6970473,6970567-6970635,
6970711-6970849,6970964-6971532,6971799-6971966,
6972097-6972184,6972260-6972818,6972924-6973024,
6973113-6973155,6973845-6973938,6974160-6974215,
6974460-6974581,6975306-6975517
Length = 816
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 407 PDGVAAPPWRTFTEPVGLEPR*QPGPKRETKPALPRANETAPR 279
P AAPP + EP E + P P + P +P NE R
Sbjct: 451 PTAAAAPPVESKAEPEKFEKKDNPSPAAKA-PEMPPDNEFEKR 492
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,576,223
Number of Sequences: 37544
Number of extensions: 277152
Number of successful extensions: 1086
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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