Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1480
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58259| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_49774| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73) 30 1.4
SB_9082| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_17429| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-34) 29 2.5
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4) 29 4.4
SB_46871| Best HMM Match : PAN (HMM E-Value=1) 29 4.4
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_19748| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_41279| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_2013| Best HMM Match : Lipase_GDSL (HMM E-Value=2.7) 28 7.6
>SB_58259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Frame = +3
Query: 15 KDYYFISTS--SKDDLHRRIGGRCLTNNMKLVFRVCCKPE 128
++YYFI+TS +K L + GG C+ +NM++ F +C P+
Sbjct: 90 QEYYFIATSDGTKSSLDKTSGGNCIKSNMRMKFYICKSPQ 129
>SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +3
Query: 15 KDYYFISTSS--KDDLHRRIGGRCLTNNMKLVFRVC 116
KDY+FI+TS+ + L GRC T+NMKL VC
Sbjct: 279 KDYFFIATSNGQQSSLQSTRNGRCQTHNMKLQVHVC 314
>SB_49774| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 552
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 15 KDYYFISTSS--KDDLHRRIGGRCLTNNMKLVFRVCCKPED 131
++YYFI+TS+ K L GGRC ++ M+L +C +D
Sbjct: 83 REYYFIATSTGDKSSLDSTAGGRCSSSRMRLQIHICRDVDD 123
>SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 36.3 bits (80), Expect = 0.022
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 6 TQYKDYYFISTSS--KDDLHRRIGGRCLTNNMKLVFRVCCKPED 131
T+ K YYFI TSS + + GGRC N +KL VC D
Sbjct: 483 TKGKTYYFIDTSSGTSNTIDSLNGGRCAQNKLKLKIYVCLSESD 526
>SB_10311| Best HMM Match : S-antigen (HMM E-Value=0.73)
Length = 617
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 298 ARGSAGFVSRFGPGC*RGSSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRH 477
ARG +R GP RG + G+ AA SGPP ++ S+ + A T +S+
Sbjct: 381 ARGKPS-PARGGPSPARGVATRGAAKTASPAAAKTSGPPAKSASNHKCSPAKPSTPASKD 439
Query: 478 SS 483
++
Sbjct: 440 AA 441
>SB_9082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 644 LFMSTP-QMKTSHILVSTYKNPKSHLSIRFMHNPLGILATALVY 516
+F +TP Q+ + ++Y+ PK H +R+ L + + L+Y
Sbjct: 5 IFYTTPLQLNNKTVNYNSYRTPKKHNRLRYSRLQLHLATSTLIY 48
>SB_17429| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-34)
Length = 499
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 15 KDYYFISTS--SKDDLHRRIGGRCLTNNMKLVFRVC 116
++YYFI TS S L GG C ++ MK+ VC
Sbjct: 91 QEYYFIGTSDGSMLSLGATSGGHCTSHKMKISIYVC 126
>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1221
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +1
Query: 331 GPGC*RGSSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSSL 486
GP R +S TG N TPS PP A+S H+ S+P +S S+
Sbjct: 372 GPSSARRTSYTGLQN------HTPSKPPMPAKSPGRHSGQSSPRQASPPQSV 417
>SB_47152| Best HMM Match : Vicilin_N (HMM E-Value=5.4)
Length = 330
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 381 PGRRGHPVRTSETSP 425
PGR+GHPV T +T P
Sbjct: 253 PGRKGHPVSTQQTLP 267
>SB_46871| Best HMM Match : PAN (HMM E-Value=1)
Length = 525
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 346 RGSSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSR 474
+G P V V +TP+ P +QA S++ D+ +SSS+
Sbjct: 350 QGEEPDCQVQVPSTSISTPAEPSQQATSTNVRLDSRTNSSSSK 392
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 353 EPR*QPGPKRETKPALPRANETAPRS 276
+PR P PKR +PALP+ + A +S
Sbjct: 837 KPRRPPPPKRPERPALPKTSALANKS 862
>SB_19748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -1
Query: 416 LGGPDGVAAPPWRTFTEPVGLEPR*QPGPKR 324
LGGP+G APP R FTE PR P K+
Sbjct: 19 LGGPEGRFAPPTR-FTESPQSPPRKDPVCKK 48
>SB_41279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 599
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 358 PTGSVNVRQGGAATPSGPPRQARSSS 435
P SV+ QGG+A PPRQ SS
Sbjct: 223 PESSVHQAQGGSANTYSPPRQNSMSS 248
>SB_2013| Best HMM Match : Lipase_GDSL (HMM E-Value=2.7)
Length = 518
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Frame = -1
Query: 560 FMHNPLGILATALVYFTHYSRKFTYRLECRDEDVGFEASAWCELDRACLG-GPD-----G 399
F H L + ++ FT +++ D++ ++ A + R +G GP G
Sbjct: 366 FYHRTLNLKPLSIQGFTFIVKRYLNF----DKNTDYQEMARMDRQRGWVGSGPGATIKYG 421
Query: 398 VAAPPWRTFTEPV 360
V PPWRT TE V
Sbjct: 422 VLVPPWRTGTEEV 434
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,643,683
Number of Sequences: 59808
Number of extensions: 298534
Number of successful extensions: 1070
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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