Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1480
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z71178-3|CAA94876.2| 254|Caenorhabditis elegans Hypothetical pr... 36 0.033
AF201079-1|AAF25647.1| 279|Caenorhabditis elegans VAB-2 protein. 33 0.13
AC024759-9|AAK68436.1| 279|Caenorhabditis elegans Variable abno... 33 0.13
Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical p... 32 0.41
Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z70207-7|CAA94131.2| 153|Caenorhabditis elegans Hypothetical pr... 31 0.94
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 1.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 1.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 1.2
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 3.8
U58735-3|AAC48143.1| 337|Caenorhabditis elegans Hypothetical pr... 29 3.8
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 3.8
U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical pr... 27 8.8
U39998-4|AAN60511.1| 351|Caenorhabditis elegans Hypothetical pr... 27 8.8
U39998-3|AAO38584.1| 460|Caenorhabditis elegans Hypothetical pr... 27 8.8
U39998-2|AAL00881.1| 484|Caenorhabditis elegans Hypothetical pr... 27 8.8
U39998-1|AAO38583.1| 475|Caenorhabditis elegans Hypothetical pr... 27 8.8
>Z71178-3|CAA94876.2| 254|Caenorhabditis elegans Hypothetical
protein B0024.3 protein.
Length = 254
Score = 35.5 bits (78), Expect = 0.033
Identities = 25/69 (36%), Positives = 34/69 (49%)
Frame = +1
Query: 283 GAVSFARGSAGFVSRFGPGC*RGSSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPT 462
GA S RG G +RFG G G+S +V GG T + + SSS ++ SN
Sbjct: 26 GAKSIGRGGGG--ARFGVGRGGGASTVRGSSVYSGGFRTGTSGWKTGTSSSSNSYGSNSF 83
Query: 463 SSSRHSSLY 489
S+ +SLY
Sbjct: 84 RSTIFASLY 92
>AF201079-1|AAF25647.1| 279|Caenorhabditis elegans VAB-2 protein.
Length = 279
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +3
Query: 21 YYFISTS--SKDDLHRRIGGRCLTNNMKLVFRV 113
YYFISTS S+ L+ GG C ++N+K+V +
Sbjct: 121 YYFISTSTGSRKGLYNEQGGLCASHNLKMVIHI 153
>AC024759-9|AAK68436.1| 279|Caenorhabditis elegans Variable
abnormal morphology protein2 protein.
Length = 279
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +3
Query: 21 YYFISTS--SKDDLHRRIGGRCLTNNMKLVFRV 113
YYFISTS S+ L+ GG C ++N+K+V +
Sbjct: 121 YYFISTSTGSRKGLYNEQGGLCASHNLKMVIHI 153
>Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical
protein T09F3.1 protein.
Length = 355
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 334 PGC*RGSS--PTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSSL 486
P C + SS P +V TPS PPR + SSS A AS+P++++ +S++
Sbjct: 39 PTCEKTSSNQPMSTVTSSTTSPITPSTPPRASSSSSMFA-ASSPSAAATYSTV 90
>Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical
protein T09F3.1 protein.
Length = 355
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 334 PGC*RGSS--PTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSSL 486
P C + SS P +V TPS PPR + SSS A AS+P++++ +S++
Sbjct: 39 PTCEKTSSNQPMSTVTSSTTSPITPSTPPRASSSSSMFA-ASSPSAAATYSTV 90
>Z70207-7|CAA94131.2| 153|Caenorhabditis elegans Hypothetical
protein F15A2.5 protein.
Length = 153
Score = 30.7 bits (66), Expect = 0.94
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 15 KDYYFISTSSKD--DLHRRIGGRCLTNNMKLVFRV 113
K YY ISTS+ D +++ +GG C ++MKL V
Sbjct: 59 KTYYIISTSTGDIEGINQAVGGLCKYHHMKLAISV 93
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 346 RGSSPTGSVNVRQ-GGAATPSG---PPRQARSSSHHADASNPTSS 468
RGS PTGS+ Q GG+ P+G PP R + S PT S
Sbjct: 304 RGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGS 348
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 346 RGSSPTGSVNVRQ-GGAATPSG---PPRQARSSSHHADASNPTSS 468
RGS PTGS+ Q GG+ P+G PP R + S PT S
Sbjct: 325 RGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGS 369
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +1
Query: 346 RGSSPTGSVNVRQ-GGAATPSG---PPRQARSSSHHADASNPTSS 468
RGS PTGS+ Q GG+ P+G PP R + S PT S
Sbjct: 310 RGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGS 354
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 138 ETDPRACSKRERPASYYSLGTGRRCVDADHPC 43
+ +P C+ R P Y +L T RRC+D+ C
Sbjct: 2823 DENPNYCNTRSCPEDY-NLCTNRRCIDSAKKC 2853
>U58735-3|AAC48143.1| 337|Caenorhabditis elegans Hypothetical
protein F20B4.2 protein.
Length = 337
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/41 (26%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = -1
Query: 650 IQLFMSTPQMK-TSHILVSTYKNPKSHLSIRFMHNPLGILA 531
+ F STP ++ + +L++ + + ++++ +H PLG+LA
Sbjct: 188 VDAFCSTPNVQYETMLLIAKSRTLSARMNVKMLHLPLGLLA 228
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 138 ETDPRACSKRERPASYYSLGTGRRCVDADHPC 43
+ +P C+ R P Y +L T RRC+D+ C
Sbjct: 2823 DENPNYCNTRSCPEDY-NLCTNRRCIDSAKKC 2853
>U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical
protein T09B4.5a protein.
Length = 327
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 397 TPSGPPRQARSSSHHADASNPTSSSRHSSLYVNFLE*CVK*TSAVAKMPNGLCIKRIDKW 576
TPS P A + S PT++SR S+ + VK + +V K P + +K I+
Sbjct: 77 TPSKTPSSASARSRSRSRGRPTNASRLSASTPSASSTSVKRSRSVTKTPRDV-VKTIEVA 135
Query: 577 D 579
D
Sbjct: 136 D 136
>U39998-4|AAN60511.1| 351|Caenorhabditis elegans Hypothetical
protein ZK622.3c protein.
Length = 351
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 340 C*RGSSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSSLYVNFL 501
C R G V++R+ + +G R S H +NPT R SSLY+N L
Sbjct: 30 CMRWLRSHGIVHLRESCSEPSTG--RSKAKSMHDTANANPTHY-RFSSLYINLL 80
>U39998-3|AAO38584.1| 460|Caenorhabditis elegans Hypothetical
protein ZK622.3d protein.
Length = 460
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 340 C*RGSSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSSLYVNFL 501
C R G V++R+ + +G R S H +NPT R SSLY+N L
Sbjct: 139 CMRWLRSHGIVHLRESCSEPSTG--RSKAKSMHDTANANPTHY-RFSSLYINLL 189
>U39998-2|AAL00881.1| 484|Caenorhabditis elegans Hypothetical
protein ZK622.3b protein.
Length = 484
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 340 C*RGSSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSSLYVNFL 501
C R G V++R+ + +G R S H +NPT R SSLY+N L
Sbjct: 163 CMRWLRSHGIVHLRESCSEPSTG--RSKAKSMHDTANANPTHY-RFSSLYINLL 213
>U39998-1|AAO38583.1| 475|Caenorhabditis elegans Hypothetical
protein ZK622.3a protein.
Length = 475
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +1
Query: 340 C*RGSSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSSLYVNFL 501
C R G V++R+ + +G R S H +NPT R SSLY+N L
Sbjct: 154 CMRWLRSHGIVHLRESCSEPSTG--RSKAKSMHDTANANPTHY-RFSSLYINLL 204
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,096,662
Number of Sequences: 27780
Number of extensions: 226082
Number of successful extensions: 838
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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