Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1480
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family...    34   0.072
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ...    30   1.2  
At2g07360.1 68415.m00843 SH3 domain-containing protein contains ...    30   1.2  
At3g09000.1 68416.m01053 proline-rich family protein                   29   2.0  
At5g64590.1 68418.m08117 hypothetical protein contains Pfam prof...    29   2.7  
At3g22520.1 68416.m02846 expressed protein                             29   2.7  
At4g12770.1 68417.m02004 auxilin-related low similarity to SP|Q2...    29   3.6  
At2g33460.1 68415.m04101 p21-rho-binding domain-containing prote...    29   3.6  
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t...    29   3.6  
At1g35830.1 68414.m04452 VQ motif-containing protein contains PF...    29   3.6  
At4g20690.1 68417.m03007 hypothetical protein                          28   6.2  
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    28   6.2  
At4g16563.1 68417.m02506 aspartyl protease family protein contai...    27   8.2  
At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29) c...    27   8.2  
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains...    27   8.2  
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains...    27   8.2  

>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
           protein
          Length = 635

 Score = 34.3 bits (75), Expect = 0.072
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
 Frame = +1

Query: 349 GSSPTGSVNVRQGGAATPSGPPRQ-----ARSSSHHADASNPTSSSRHSSLYVNF 498
           GS+P    +V  G A +P+  PR      A SSS  A +S+ TSS  HSS  + F
Sbjct: 149 GSAPAAITSVSSGPAQSPASSPRLWIDRFATSSSASATSSSSTSSPFHSSSLLGF 203


>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1 RNA
            helicase pNORF1 [Homo sapiens] GI:1885356
          Length = 1254

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +1

Query: 295  FARGSAGFVSRFGPGC*RGSSPTGSVNVRQGGAATPSGPPRQARSSSHHA 444
            F  G AG +     G    ++       R GG+  PSGPP  AR   H A
Sbjct: 946  FYGGGAGMIGNDNFGSGNPNADRRGSRGRAGGSYLPSGPPNGARPGLHPA 995


>At2g07360.1 68415.m00843 SH3 domain-containing protein contains
           Pfam profile PF00018: SH3 domain
          Length = 1196

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 391 AATPSGPPRQARSSSHHADASNPTSSSRHSSLYVN 495
           +A P+  P Q+ SSS  + AS PTS+S  SS +++
Sbjct: 14  SADPTPVPAQSTSSSASSTASQPTSASASSSSHLH 48


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 346 RGSSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSS 483
           R S+PT    +    A T +  PR   +SS  A ++ PT S+   S
Sbjct: 185 RSSTPTSRATLTAARATTSTAAPRTTTTSSGSARSATPTRSNPRPS 230


>At5g64590.1 68418.m08117 hypothetical protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 206

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 593 YKNPKSHLSIRFMHNPLGILATALVYFTHYSRKFTYRLE 477
           Y     H  I  M +PLG L T  + FT+  R+ TY+ E
Sbjct: 57  YSLATKHAGIGMMCSPLGQLHTLSLSFTYIYRRQTYQTE 95


>At3g22520.1 68416.m02846 expressed protein
          Length = 600

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 352 SSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTS-SSRHSSLYVNFL 501
           S+P GS N ++ GA TP+  P+ +        +   TS   R  ++ +NFL
Sbjct: 258 STPRGSSNKKKKGATTPATGPQSSTKPKPSRQSGRRTSIQQRGGAVDLNFL 308


>At4g12770.1 68417.m02004 auxilin-related low similarity to
           SP|Q27974 Auxilin {Bos taurus}
          Length = 909

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 374 FTEPVGLEPR*QPGPKRETKPALPRANETAPRS*SPHSRL 255
           FT+P    P  +P P R T+P   + NE +  + + HS +
Sbjct: 363 FTQPTSAPPPTRPPPPRPTRPIKKKVNEPSIPTSAYHSHV 402


>At2g33460.1 68415.m04101 p21-rho-binding domain-containing protein
           contains Pfam PF00786: P21-Rho-binding domain
          Length = 224

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +1

Query: 358 PTGSVNVRQGGAATPS---GPPRQARSSSHHADASNPTSSSRHS 480
           P      + GGAA+P+    PPR  +SS + A +  P+  SRH+
Sbjct: 100 PKQKTRRKPGGAASPNHNGSPPR--KSSGNAASSDEPSKHSRHN 141


>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
           hypothetical protein GI:4204272 from [Arabidopsis
           thaliana] contains weak PHD zinc finger motifs contains
           weak PHD zinc finger motifs DC1 domain, a divergent
           protein kinase C domain of unknown function.
          Length = 684

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 545 LGILATALVYFTHYSRKFTYRLECRDEDVGFEASAWCEL 429
           LGI   +L +  HY       + CRDED       WCE+
Sbjct: 549 LGIRCASLPFEAHYKHDRHPLILCRDEDTS-SGLYWCEI 586


>At1g35830.1 68414.m04452 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 302

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 352 SSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSSLYVNFL 501
           SS TG+          P  PP    SS+++ D +  +SSS  S+ Y+NF+
Sbjct: 18  SSSTGAPQDHSSFFLPPFQPPPS--SSTYYGDPTTLSSSSSSSATYLNFV 65


>At4g20690.1 68417.m03007 hypothetical protein 
          Length = 138

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +1

Query: 340 C*RGSSPTGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSS 483
           C RG  P G +  +   +  PS P R      H    S  +SSS   S
Sbjct: 3   CQRGGIPRGHLETKTNSSDRPSQPARHLTRLKHLVSRSVSSSSSARPS 50


>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 437 CELDRACLGGPDGVAAPPWRTFTEPVGLEPR*QPGPKRETKPALPRANET-APRS*SP 267
           C  D+ C GG  G + P  +    P   EP+ +  P    +P+ P+  E+  P+  SP
Sbjct: 392 CSKDK-CAGGGGGGSNPSPKPTPTPKAPEPKKEINPPNLEEPSKPKPEESPKPQQPSP 448


>At4g16563.1 68417.m02506 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 499

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 400 PSGPPRQARSSSHHADASNPTSSSRHSSL 486
           P  PP    SS+     S+P+ S+ HSSL
Sbjct: 125 PPSPPSSLSSSATTVSCSSPSCSAAHSSL 153


>At4g04530.1 68417.m00660 Ulp1 protease family protein (snoR29)
           contains Pfam profile PF02902: Ulp1 protease family,
           C-terminal catalytic domain; snoR29 gene for small
           nucleolar RNA GI:15706258
          Length = 917

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 373 NVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSS 483
           N+ Q  A++ SGPP+  +  S  +D S   SSS+ SS
Sbjct: 538 NINQSHASS-SGPPQAGKFGSTCSDPSGGPSSSKSSS 573


>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 829

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 361 TGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSS 483
           +  V+++       S PP+  R+SS  A+ SN  SSS   S
Sbjct: 197 SSGVDIKSSSMEGSSNPPKLRRNSSAAANISNLASSSNQVS 237


>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 824

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 361 TGSVNVRQGGAATPSGPPRQARSSSHHADASNPTSSSRHSS 483
           +  V+++       S PP+  R+SS  A+ SN  SSS   S
Sbjct: 192 SSGVDIKSSSMEGSSNPPKLRRNSSAAANISNLASSSNQVS 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,439,470
Number of Sequences: 28952
Number of extensions: 209960
Number of successful extensions: 661
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)