Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1479
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    30   0.28 
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    29   0.49 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    28   1.1  
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c...    26   4.6  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   4.6  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    26   6.0  

>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +1

Query: 505 ITIATTQGEDLLTQVRKPNLTYNIISHVAAVERLLVQLEETEKQF 639
           +T+ +TQ +DL+  V KP   + ++ H   + +L+VQ  + ++ F
Sbjct: 5   VTVGSTQFDDLIRAVLKPEFQHCLVKH--GINQLIVQYGKGKQAF 47


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 432 WETIPHKPKNY*TVRELGI 488
           WE +PH   +Y T++ELGI
Sbjct: 493 WEVVPHNIASYTTIKELGI 511


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 338  QQRIALEKFSTLMKETSTKLDDFMHEIVDCDMGNDPTQ 451
            ++R+ALEK   +M++   +   F+ +  D D+G D T+
Sbjct: 1280 KKRLALEKQKKIMQQFRDQQASFLAQNTDFDIGEDQTE 1317


>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 134

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 613 QLEETEKQFDNFWQKHSTK 669
           +LEET+  FD++W K + K
Sbjct: 91  ELEETDAGFDSYWNKITAK 109


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 144 AVYVLRPSSFLQKALSEVSSKLFKEEFRF 230
           A Y+ R +  L+K   E+S+K FK++  F
Sbjct: 467 AEYIYRTTIELEKRFQEISNKEFKDKMSF 495


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 514 ATTQGEDLLTQVRKPNLT 567
           ATT+GED + Q+ K  LT
Sbjct: 39  ATTEGEDFVKQIEKQKLT 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,673
Number of Sequences: 5004
Number of extensions: 49735
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)