Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1479
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)                   48   7e-06
SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)                 48   7e-06
SB_14164| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.018
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)                 31   0.91 
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              28   6.4  
SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_7953| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.5  
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)               28   8.5  

>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
          Length = 648

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 22/48 (45%), Positives = 30/48 (62%)
 Frame = +2

Query: 260 LYEHFERSQLTPDLGGELQYSHSEWIQQRIALEKFSTLMKETSTKLDD 403
           L +  E SQLT  LGG L+Y H++W+  R+ALEKF        +KLD+
Sbjct: 248 LAKFIEPSQLTASLGGTLKYDHTDWLNMRLALEKFLYEAMALLSKLDE 295


>SB_3346| Best HMM Match : Spectrin (HMM E-Value=0.012)
          Length = 983

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 21/73 (28%), Positives = 37/73 (50%)
 Frame = +3

Query: 3   LLYLTSVPSILEADMGFHIIVDRRKDRWNSVKTVLLRISEFFPGIIHAVYVLRPSSFLQK 182
           L+Y T +PS    +  F  ++D  +  W + K +L  + E  P  IH + +++P +F +K
Sbjct: 98  LIYFTQIPSEEVLNRKFTFVLDLHEGTWKAAKALLKTLQEVVPDKIHQIVIIKPDAFWEK 157

Query: 183 ALSEVSSKLFKEE 221
             S+ S K    E
Sbjct: 158 RKSDTSIKTTDHE 170



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 275 ERSQLTPDLGGELQYSHSEWIQQRIALEKFS 367
           + + LT D GG L Y H +WIQ+R+  E+F+
Sbjct: 185 DEAHLTRDYGGTLPYDHEDWIQRRVFAERFA 215


>SB_14164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +2

Query: 257 ELYEHFERSQLTPDLGGELQYSHSEWIQQRI 349
           +L ++F+  QLTP+  G   Y H +WI+ RI
Sbjct: 596 DLKKYFDADQLTPEFNGTFHYDHDDWIRFRI 626



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
 Frame = +3

Query: 3   LLYLTSVPSILEADMGFHIIVDRRKD-----RWNSVKTVLLRISEFFPGIIHAVYVL--R 161
           L+Y  ++       +GF  I+D  K          +   L+   E  PG +H VY++  +
Sbjct: 313 LMYFNTILKKDSQKLGFSAILDAEKSGVKRRAIEDITEALICFQESCPGALHIVYIVARK 372

Query: 162 PSSFLQKALSEVSSKL-FKEEFRF 230
            S  L  + +++  +L F+E  RF
Sbjct: 373 DSPLLMFSTTKIKEQLNFEEGGRF 396


>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
          Length = 979

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 559 NLTYNIISHVAAVERLLVQLEETEKQFDNFWQKHSTKLNHWLK 687
           N+T ++ ++   +E LL +L ++E+ F  FW  H  ++   L+
Sbjct: 77  NMTPDVKANTTELEGLLQRLYQSEEDFGKFWVDHEKRIRQGLE 119


>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/62 (19%), Positives = 32/62 (51%)
 Frame = +1

Query: 505  ITIATTQGEDLLTQVRKPNLTYNIISHVAAVERLLVQLEETEKQFDNFWQKHSTKLNHWL 684
            I  A  +GE ++ +++  +      S +  VE+++ +L+   +  ++ W +   +L  WL
Sbjct: 833  IHTAIDEGETIVEELKLASADGMDSSSLHHVEKVIKELDRVRRAIEHSWSRRRQQLELWL 892

Query: 685  KV 690
            ++
Sbjct: 893  QL 894


>SB_32060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1162

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 619 EETEKQFDNFWQKHSTK 669
           EE +++FD FW KH  K
Sbjct: 905 EEMKQEFDEFWSKHKDK 921


>SB_7953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 37

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 126 FPGIIHAVYVLRPSSFLQKAL-SEVSSKLFKEEFR 227
           FP  ++ VYVL+P  F+Q+ +   +SS+  +  FR
Sbjct: 3   FPDRVNCVYVLKPQGFMQRFIGGSLSSEDAQAAFR 37


>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
          Length = 1093

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 363  NFSKAIRCCIHSECEYC 313
            N  K+I CC    CEYC
Sbjct: 1060 NLRKSINCCCEVTCEYC 1076


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,888,096
Number of Sequences: 59808
Number of extensions: 371559
Number of successful extensions: 1123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)