Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1479
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p... 41 0.001
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p... 41 0.001
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p... 41 0.001
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle... 41 0.001
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle... 41 0.001
U58744-2|AAL65789.1| 95|Caenorhabditis elegans Hypothetical pr... 35 0.049
Z75542-2|CAA99862.2| 712|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z66524-6|CAA91418.2| 408|Caenorhabditis elegans Hypothetical pr... 32 0.46
AF098997-8|AAC68719.3| 335|Caenorhabditis elegans Serpentine re... 32 0.46
Z93377-4|CAB07578.2| 325|Caenorhabditis elegans Hypothetical pr... 28 7.5
U39649-6|AAA80387.1| 57|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF022978-7|AAG24177.2| 403|Caenorhabditis elegans Nuclear hormo... 27 9.9
>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
protein 73, isoform b protein.
Length = 1638
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 6 LYLTSVPSILEADMGFHIIVDRR-KDRWNSVKTVLLRISEFFPGIIHAVYVLRPSSFLQK 182
LYL V S + + GF +++D R K W +V+ +L +S V++++P F +K
Sbjct: 57 LYLFEVTSKMAREKGFLVVIDMRGKQTWTNVRHILKALSSIESSSTVQVFIIKPEKFWEK 116
Query: 183 ALSEVS 200
+++S
Sbjct: 117 QKAQMS 122
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +2
Query: 260 LYEHFERSQLTPDLGGELQYSHSEWIQQRIALEKFSTLMKETSTKLDDFMHEIVDCDMGN 439
L + + S L +GG Y H EW++ R+ LEK+ + E KL+ EI + +
Sbjct: 138 LIKIIDSSHLPKTVGGSYPYDHDEWLELRLDLEKWIWNITEIMEKLESVRREICEGEQPV 197
Query: 440 DPTQTKELL 466
D T L
Sbjct: 198 DVTTANAAL 206
>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
protein 73, isoform f protein.
Length = 2140
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 6 LYLTSVPSILEADMGFHIIVDRR-KDRWNSVKTVLLRISEFFPGIIHAVYVLRPSSFLQK 182
LYL V S + + GF +++D R K W +V+ +L +S V++++P F +K
Sbjct: 57 LYLFEVTSKMAREKGFLVVIDMRGKQTWTNVRHILKALSSIESSSTVQVFIIKPEKFWEK 116
Query: 183 ALSEVS 200
+++S
Sbjct: 117 QKAQMS 122
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +2
Query: 260 LYEHFERSQLTPDLGGELQYSHSEWIQQRIALEKFSTLMKETSTKLDDFMHEIVDCDMGN 439
L + + S L +GG Y H EW++ R+ LEK+ + E KL+ EI + +
Sbjct: 138 LIKIIDSSHLPKTVGGSYPYDHDEWLELRLDLEKWIWNITEIMEKLESVRREICEGEQPV 197
Query: 440 DPTQTKELL 466
D T L
Sbjct: 198 DVTTANAAL 206
>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
protein 73, isoform a protein.
Length = 2488
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 6 LYLTSVPSILEADMGFHIIVDRR-KDRWNSVKTVLLRISEFFPGIIHAVYVLRPSSFLQK 182
LYL V S + + GF +++D R K W +V+ +L +S V++++P F +K
Sbjct: 57 LYLFEVTSKMAREKGFLVVIDMRGKQTWTNVRHILKALSSIESSSTVQVFIIKPEKFWEK 116
Query: 183 ALSEVS 200
+++S
Sbjct: 117 QKAQMS 122
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +2
Query: 260 LYEHFERSQLTPDLGGELQYSHSEWIQQRIALEKFSTLMKETSTKLDDFMHEIVDCDMGN 439
L + + S L +GG Y H EW++ R+ LEK+ + E KL+ EI + +
Sbjct: 138 LIKIIDSSHLPKTVGGSYPYDHDEWLELRLDLEKWIWNITEIMEKLESVRREICEGEQPV 197
Query: 440 DPTQTKELL 466
D T L
Sbjct: 198 DVTTANAAL 206
>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine
nucleotide exchange factorUNC-73B protein.
Length = 1638
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 6 LYLTSVPSILEADMGFHIIVDRR-KDRWNSVKTVLLRISEFFPGIIHAVYVLRPSSFLQK 182
LYL V S + + GF +++D R K W +V+ +L +S V++++P F +K
Sbjct: 57 LYLFEVTSKMAREKGFLVVIDMRGKQTWTNVRHILKALSSIESSSTVQVFIIKPEKFWEK 116
Query: 183 ALSEVS 200
+++S
Sbjct: 117 QKAQMS 122
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +2
Query: 260 LYEHFERSQLTPDLGGELQYSHSEWIQQRIALEKFSTLMKETSTKLDDFMHEIVDCDMGN 439
L + + S L +GG Y H EW++ R+ LEK+ + E KL+ EI + +
Sbjct: 138 LIKIIDSSHLPKTVGGSYPYDHDEWLELRLDLEKWIWNITEIMEKLESVRREICEGEQPV 197
Query: 440 DPTQTKELL 466
D T L
Sbjct: 198 DVTTANAAL 206
>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine
nucleotide exchange factorUNC-73A protein.
Length = 2488
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 6 LYLTSVPSILEADMGFHIIVDRR-KDRWNSVKTVLLRISEFFPGIIHAVYVLRPSSFLQK 182
LYL V S + + GF +++D R K W +V+ +L +S V++++P F +K
Sbjct: 57 LYLFEVTSKMAREKGFLVVIDMRGKQTWTNVRHILKALSSIESSSTVQVFIIKPEKFWEK 116
Query: 183 ALSEVS 200
+++S
Sbjct: 117 QKAQMS 122
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +2
Query: 260 LYEHFERSQLTPDLGGELQYSHSEWIQQRIALEKFSTLMKETSTKLDDFMHEIVDCDMGN 439
L + + S L +GG Y H EW++ R+ LEK+ + E KL+ EI + +
Sbjct: 138 LIKIIDSSHLPKTVGGSYPYDHDEWLELRLDLEKWIWNITEIMEKLESVRREICEGEQPV 197
Query: 440 DPTQTKELL 466
D T L
Sbjct: 198 DVTTANAAL 206
>U58744-2|AAL65789.1| 95|Caenorhabditis elegans Hypothetical
protein F55F1.1 protein.
Length = 95
Score = 35.1 bits (77), Expect = 0.049
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 257 ELYEHFERSQLTPDLGGELQYSHSEWIQQRI 349
EL ++ LT D+GG ++Y+H EW+Q R+
Sbjct: 49 ELRKYIHHEFLTMDVGGLIKYNHLEWVQHRM 79
>Z75542-2|CAA99862.2| 712|Caenorhabditis elegans Hypothetical
protein F55D12.2 protein.
Length = 712
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 254 HELYEHFERSQLTPDLGGELQYSHSEWIQQRIALEKFSTLMKETSTKLDDFMHEIVD 424
H+L + + +QL GG L Y W+ +RI ++K+ + E D H + D
Sbjct: 126 HKLSKFVDVNQLPEQFGGTLGYDPDSWLSKRIEIKKWQNYLVEVDA--DSSKHSLDD 180
>Z66524-6|CAA91418.2| 408|Caenorhabditis elegans Hypothetical
protein T13H5.2 protein.
Length = 408
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 93 VKTVLLRISEFFPGIIHAVYVLRPSSFLQKALSEVSSKLFKE-EFRFKVL 239
V T+L ++ E FP +I ++++ +F+Q S +S L K+ + + K+L
Sbjct: 192 VTTMLSQLQEMFPDVIRKIFIVNTPTFIQVLWSMISPCLAKQTQQKVKIL 241
>AF098997-8|AAC68719.3| 335|Caenorhabditis elegans Serpentine
receptor, class i protein54 protein.
Length = 335
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 100 VFTEFHLSFLLSTIMWKPISASSIEGTEVR 11
+ T+FHL+FL+ + + PI A SI G +R
Sbjct: 56 ILTDFHLTFLIQPVPFYPILAGSIMGFGIR 85
>Z93377-4|CAB07578.2| 325|Caenorhabditis elegans Hypothetical
protein F13A7.8 protein.
Length = 325
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 94 TEFHLSFLLSTIMWKPISASSIEG 23
T+ HLSFL+ I + PI A IEG
Sbjct: 58 TDTHLSFLMQPIPFYPILAGYIEG 81
>U39649-6|AAA80387.1| 57|Caenorhabditis elegans Hypothetical
protein T23F2.5 protein.
Length = 57
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 102 VLLRISEFFPGIIHAVYVL 158
+LL I + PGIIHA YV+
Sbjct: 36 ILLTILGYIPGIIHACYVI 54
>AF022978-7|AAG24177.2| 403|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 131 protein.
Length = 403
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +1
Query: 544 QVRKPNLTYNIISHVAAVERLLVQLEETEKQFDNFWQKHSTKLNHWL 684
Q++K N +N + H + L T K+ FW+ H WL
Sbjct: 154 QLQKLNFGFNCMKHTGIANFQRIHLV-TRKEVTGFWEYHMLASAKWL 199
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,725,423
Number of Sequences: 27780
Number of extensions: 275764
Number of successful extensions: 774
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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