Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1479
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53350.3 68416.m05888 myosin heavy chain-related low similari... 31 0.74
At3g53350.2 68416.m05887 myosin heavy chain-related low similari... 31 0.74
At3g53350.1 68416.m05886 myosin heavy chain-related low similari... 31 0.74
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel... 30 1.7
At1g70110.1 68414.m08068 lectin protein kinase family protein co... 29 4.0
At5g51060.1 68418.m06329 respiratory burst oxidase protein C (Rb... 28 6.9
At3g17440.1 68416.m02227 novel plant SNARE 13 (NPSN13) identical... 27 9.2
>At3g53350.3 68416.m05888 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 394
Score = 31.1 bits (67), Expect = 0.74
Identities = 19/84 (22%), Positives = 39/84 (46%)
Frame = +2
Query: 275 ERSQLTPDLGGELQYSHSEWIQQRIALEKFSTLMKETSTKLDDFMHEIVDCDMGNDPTQT 454
+R+ P+L + E + + L + L +E + +D H+++D + D ++
Sbjct: 66 KRTGRIPELESTISQLQEELKKAKEELNRSEALKREAQEEAEDAKHQLMDINASED-SRI 124
Query: 455 KELLDCQGTRYKALKSELQ*QQHK 526
+EL R K +SEL+ Q +
Sbjct: 125 EELRKLSQERDKTWQSELEAMQRQ 148
>At3g53350.2 68416.m05887 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 394
Score = 31.1 bits (67), Expect = 0.74
Identities = 19/84 (22%), Positives = 39/84 (46%)
Frame = +2
Query: 275 ERSQLTPDLGGELQYSHSEWIQQRIALEKFSTLMKETSTKLDDFMHEIVDCDMGNDPTQT 454
+R+ P+L + E + + L + L +E + +D H+++D + D ++
Sbjct: 66 KRTGRIPELESTISQLQEELKKAKEELNRSEALKREAQEEAEDAKHQLMDINASED-SRI 124
Query: 455 KELLDCQGTRYKALKSELQ*QQHK 526
+EL R K +SEL+ Q +
Sbjct: 125 EELRKLSQERDKTWQSELEAMQRQ 148
>At3g53350.1 68416.m05886 myosin heavy chain-related low similarity
to filamin-interacting protein S-FILIP [Rattus
norvegicus] GI:21392397, nonmuscle heavy chain myosin
II-A [Mus musculus] GI:17978023
Length = 396
Score = 31.1 bits (67), Expect = 0.74
Identities = 19/84 (22%), Positives = 39/84 (46%)
Frame = +2
Query: 275 ERSQLTPDLGGELQYSHSEWIQQRIALEKFSTLMKETSTKLDDFMHEIVDCDMGNDPTQT 454
+R+ P+L + E + + L + L +E + +D H+++D + D ++
Sbjct: 68 KRTGRIPELESTISQLQEELKKAKEELNRSEALKREAQEEAEDAKHQLMDINASED-SRI 126
Query: 455 KELLDCQGTRYKALKSELQ*QQHK 526
+EL R K +SEL+ Q +
Sbjct: 127 EELRKLSQERDKTWQSELEAMQRQ 150
>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
putative (CNGC16) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 705
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Frame = +1
Query: 526 GEDLLTQVRKPNLTYNI------ISHVAAVERLLVQLEETEKQFDNFWQKHSTKLNH 678
GE+LLT PN+ +N+ + ++ VE ++ E+ + + F + HS KL H
Sbjct: 527 GEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKFVANQFRRLHSKKLQH 583
>At1g70110.1 68414.m08068 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 666
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +2
Query: 275 ERSQLTPDLGGELQYSHSEWIQQRIALE-KFSTLMKET--STKLDDFMHEIVDCDMGNDP 445
+R ++ D+ L Y H +W+Q I + K + ++ + + KL DF + CD G DP
Sbjct: 442 QRFKIIKDVASGLYYLHQQWVQVIIHRDIKPANILLDANMNAKLGDFGLAKL-CDHGTDP 500
Query: 446 TQTKELLDCQG 478
QT + G
Sbjct: 501 -QTSHVAGTLG 510
>At5g51060.1 68418.m06329 respiratory burst oxidase protein C
(RbohC) / NADPH oxidase nearly identical to respiratory
burst oxidase protein C from Arabidopsis thaliana
[gi:3242785]
Length = 905
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 87 NSVKTVLLRISEFFPGIIHAVYVLRPSSFLQKA 185
+S+K V +R +PG + A+++ RP +F K+
Sbjct: 588 SSIKAVTIRKVAVYPGNVLAIHLSRPQNFKYKS 620
>At3g17440.1 68416.m02227 novel plant SNARE 13 (NPSN13) identical to
Novel plant SNARE 13 (AtNPSN13) (SP:Q9LRP1) {Arabidopsis
thaliana}; contains Pfam profile: PF00190 11S plant seed
storage protein
Length = 269
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +2
Query: 338 QQRIALEKFSTLMKETSTKLDDFMHEIVDCDMGNDPTQTKELLDCQGTRYKALKS 502
+Q LE+ + M+E + +F E+ D + N P K+L D + + K L S
Sbjct: 40 RQSKQLEELTDKMRECKRLVKEFDRELKDEEARNSPEVNKQLNDEKQSMIKELNS 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,939,693
Number of Sequences: 28952
Number of extensions: 256462
Number of successful extensions: 757
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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