Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1477
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.1  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    28   1.5  
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S...    27   2.6  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    26   5.9  

>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 141 NKTFNFGPKTSYGTGKTQRQEKTKETSK 58
           NK FNF PK S    +T R+E  +  SK
Sbjct: 80  NKNFNFEPKNSVNKTETIREELDQAASK 107


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 241 NRIILSLNTKTHYSPLASVDVTPVPVEKTRSLLK*NLQLRTKN 113
           N +I    ++T  +PLA+ DVT +PVE    ++  +L    KN
Sbjct: 344 NPLISIFASQTAINPLANFDVTSIPVEVATEIVLTSLLKIDKN 386


>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
           Trp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 248 ILFLNGYSAGVSIVEFYSHEFIIVRVWRGDGHST-RVQTPVLLRPVGA 388
           +  L  YS  ++ +E  S  F+ +    GDGH+T  V T   +   GA
Sbjct: 68  VQILKSYSTPIANIEMVSPRFVDIVGTGGDGHNTFNVSTASAIVAAGA 115


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +2

Query: 521 SGACTALSFPA*NSPPMAVSTRGFESNLSSVRVHLDTTGGVGSFEGLFTSHSSVVS 688
           +G   A S  +  SPP   + R   SNLSSV  + D +  +GS   +  S  S  S
Sbjct: 121 AGDILASSLFSSGSPP-DTTRRNSTSNLSSVSTNSDKSRTIGSNYNMLQSTKSTAS 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,933,387
Number of Sequences: 5004
Number of extensions: 63357
Number of successful extensions: 197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)