Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1477
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0175 - 12624608-12625297                                         30   2.0  
02_03_0185 - 16134426-16134881                                         30   2.0  
09_04_0012 + 13721661-13721929,13722446-13722695                       29   2.7  
06_03_0478 - 21259376-21259465,21259862-21259924,21260025-212600...    29   4.7  
05_03_0486 + 14616354-14617200,14617288-14617329,14619433-14620508     29   4.7  
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444...    28   6.2  
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787...    28   8.1  

>06_02_0175 - 12624608-12625297
          Length = 229

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 269 SAGVSIVEFYSHEFIIVRVWRGDGHSTRVQTPVLLRPVGAHSG 397
           +A V +V  +    ++V V+  DG   RVQ   L RPVG   G
Sbjct: 6   AAAVVVVLAFMAVMVVVPVFGADGGDGRVQVQSLERPVGGGGG 48


>02_03_0185 - 16134426-16134881
          Length = 151

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +1

Query: 271 CRSLHRRILQPRIYHREGLARRRPQYQGTDTGTAATSRRTLGHLMEAPI 417
           C    RR L PR + R    +     QG D G  A  RRT  H +EA +
Sbjct: 21  CSERARRWLPPRRWRRRREGKEEVATQG-DNGDCARERRTWWHEVEAEV 68


>09_04_0012 + 13721661-13721929,13722446-13722695
          Length = 172

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -3

Query: 257 GIRFLEPNYPVVEYENPLFTLGKR--RRNTSASGEDKKPSEIKPSTSDQKPATE 102
           G RF E  YPVV+YE+   T  K+  + N      D  P E+  +  +  P+ +
Sbjct: 69  GHRFEEEGYPVVDYESDRQTARKKLVKCNPKPYDFDVLPDELDLNNGENSPSMQ 122


>06_03_0478 - 21259376-21259465,21259862-21259924,21260025-21260066,
            21260180-21260461,21261084-21261587,21261973-21261981,
            21262122-21262196,21262375-21262449,21262557-21263494,
            21263577-21263607,21263694-21263979,21264691-21264905,
            21265329-21265437,21265556-21265611,21265730-21265822,
            21266348-21266393,21266496-21267221,21267489-21267550,
            21267738-21268013,21268604-21268735,21268835-21268909
          Length = 1394

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 191  KRRRNTSASGEDKKPSEIKPSTSDQ 117
            KR+R      EDKK SE +P T+D+
Sbjct: 1082 KRQREEDLKKEDKKTSEKRPKTNDE 1106


>05_03_0486 + 14616354-14617200,14617288-14617329,14619433-14620508
          Length = 654

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 417 TDTGLTSKIASRRVSSRDSMCGLFPLSPSSVWRTHLALALHLAFPRK 557
           + T    ++  +  S+  S  GL P  P + W + L L L  A PR+
Sbjct: 185 SSTSYRIRLGPQSCSAYRSFVGLDPSQPPATWGSRLGLELQWATPRE 231


>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
            4441075-4441120,4442470-4442521,4442601-4442753,
            4443338-4443457,4443549-4443714,4443822-4443934,
            4444049-4444120,4444992-4445213,4445270-4445317,
            4445639-4445697,4445809-4445887,4445982-4446119,
            4446327-4446551,4446643-4447430,4447548-4447723,
            4447911-4448169,4448646-4448707,4451055-4451212,
            4451618-4451743,4452197-4452260,4452386-4452494,
            4452607-4452760,4453055-4453178,4453257-4453333,
            4453442-4453494,4453673-4453727,4453833-4454021
          Length = 1379

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 128  LKVLFQKASCLLHWHWCYVY 187
            ++ LF   S LLH HWC+ Y
Sbjct: 1043 VRFLFLFFSILLHQHWCFAY 1062


>05_05_0230 -
           23476919-23477372,23477656-23477695,23478578-23478700,
           23479114-23479151,23479289-23479674,23479875-23481053,
           23481805-23481928,23482733-23482779
          Length = 796

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 23/46 (50%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +1

Query: 271 CRSLHRRILQPRIYHREGLARRR---PQYQ-GTDTGTAATSRRTLG 396
           CR  HRR+L       EG +RR    P +Q GTDT TAA SRR  G
Sbjct: 758 CR--HRRLLAG-----EGPSRRAALLPDHQAGTDTTTAAPSRRPAG 796


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,666,302
Number of Sequences: 37544
Number of extensions: 445739
Number of successful extensions: 1392
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)