Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1477
(697 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38914| Best HMM Match : BAH (HMM E-Value=1.3e-08) 81 1e-15
SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3) 31 0.89
SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_27169| Best HMM Match : BCCT (HMM E-Value=0) 30 1.6
SB_15902| Best HMM Match : AMOP (HMM E-Value=3.5e-13) 29 4.8
SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36) 28 6.3
SB_19925| Best HMM Match : TUDOR (HMM E-Value=2) 28 6.3
SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1) 28 6.3
SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
>SB_38914| Best HMM Match : BAH (HMM E-Value=1.3e-08)
Length = 733
Score = 80.6 bits (190), Expect = 1e-15
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = -1
Query: 505 LDGERGNKPHILSREETLRDAIXXXXXXXXXXXXSGARVCAYWSQQYRCLYPGTVAVSSP 326
L+GERG +PH+ S ++ L A+ G RVCA+WS QYRC YPG V + P
Sbjct: 273 LNGERGRRPHLRSTDQLLTQAVKDIEPLSVASLPVGTRVCAHWSPQYRCFYPGNVIEAPP 332
Query: 325 DPHDDK-FVAVEFDDGDSGRIAIEE 254
D + V +EFDDGDSG ++E
Sbjct: 333 DEKEQPGKVWIEFDDGDSGIFPLDE 357
Score = 34.3 bits (75), Expect = 0.096
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = -2
Query: 696 KSKDTTDECEVNNPSKDPTPPVVSKCTLTEDKLDSNPRVLTAMGGLFYAGKLSAVQAPDV 517
+ KD ++ E + S D TP T T+++L +N ++L + LF+ G + Q PD+
Sbjct: 211 QEKDASESTEEED-SIDETPEE-PPFTFTKEELKNNTQMLLPVDRLFFRGHIQFYQEPDL 268
Query: 516 YAIHWT-ERGGINHTYCPERRLCE 448
+ I ERG H ++ L +
Sbjct: 269 FGIVLNGERGRRPHLRSTDQLLTQ 292
>SB_47930| Best HMM Match : Vicilin_N (HMM E-Value=1.3)
Length = 769
Score = 31.1 bits (67), Expect = 0.89
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = -1
Query: 400 GARVCAYWSQQYRCLYPGTVAVSSPDPHDDKFVAVEFDDGDSGRIAIE 257
G RV A WS + YPG V + P V FDDGD R+ E
Sbjct: 499 GVRVLARWSDNF--FYPGEV---TSGPSKAGLFNVTFDDGDKRRLRAE 541
>SB_22053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1670
Score = 31.1 bits (67), Expect = 0.89
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = -1
Query: 400 GARVCAYWSQQYRCLYPGTVAVSSPDPHDDKFVAVEFDDGDSGRIAIE 257
G RV A WS + YPG V + P V FDDGD R+ E
Sbjct: 1166 GVRVLARWSDNF--FYPGEV---TSGPSKAGLFNVTFDDGDKRRLRAE 1208
>SB_27169| Best HMM Match : BCCT (HMM E-Value=0)
Length = 583
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 645 PTPPVVSKCTLTEDKLDSNPRVLTAMGGLFYAGKLSAVQAPDVYAIHWTERGGINHT 475
P ++ KC + ED L N + GG Y+ A A +V HW G I +T
Sbjct: 46 PVIAIIRKCIVFEDSLIRNGPLFGRQGG--YSDNQRAQDAINVTLFHWGIHGWIVYT 100
>SB_15902| Best HMM Match : AMOP (HMM E-Value=3.5e-13)
Length = 609
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -3
Query: 212 NPLFTLGKRRRNTSASGEDKKPSEIKPSTSDQKPATEQ 99
+PLFT +R ++TS SG + + +P T+D AT+Q
Sbjct: 398 SPLFT-PQRSKSTSPSGVTAESATGRPQTTDALAATQQ 434
>SB_40140| Best HMM Match : SASP_gamma (HMM E-Value=0.36)
Length = 704
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Frame = -1
Query: 547 KAKCSASARCVRHTLDGERGNKPHILSREETL---RDAIXXXXXXXXXXXXSGARVCAYW 377
K + ++R R L E+ KP LSR ET+ D S A+
Sbjct: 422 KPEKQKNSRKTRKNLKEEKHEKPRDLSRNETITKVHDVKEKSHETKTLHEKSSKSNNAFI 481
Query: 376 SQQYRCLYPGTVAVSSPDPHDD 311
+C GT+A S+ DP D
Sbjct: 482 LNDQQCSKDGTIASSNSDPQTD 503
>SB_19925| Best HMM Match : TUDOR (HMM E-Value=2)
Length = 263
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 400 GARVCAYWSQQYRCLYPGTVAVSSPDPHDDKFVAVEFDDGDSGRIAIEE 254
G RV A W + + Y GTV + D + V++DDGD + + +
Sbjct: 169 GTRVIAAWPGKEK-YYLGTVDAVNKDQMYEPQYHVKYDDGDESWVTVNQ 216
>SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)
Length = 364
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 400 GARVCAYWSQQYRCLYPGTVAVSSPDPHDDKFVAVEFDDGDSGRIAIEE 254
G RV A W + + Y GTV + D + V++DDGD + + +
Sbjct: 212 GTRVIAAWPGKEK-YYLGTVDAVNKDQMYEPQYHVKYDDGDESWVTVNQ 259
>SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 400 GARVCAYWSQQYRCLYPGTVAVSSPDPHDDKFVAVEFDDGDSGRIAIEE 254
G RV A W + + Y GTV + D + V++DDGD + + +
Sbjct: 373 GTRVIAAWPGKEK-YYLGTVDAVNKDQMYEPQYHVKYDDGDESWVTVNQ 420
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,593,695
Number of Sequences: 59808
Number of extensions: 506672
Number of successful extensions: 1572
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1569
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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