Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1477
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14430.1 68417.m02226 enoyl-CoA hydratase/isomerase family pr...    29   2.2  
At1g01650.1 68414.m00083 protease-associated (PA) domain-contain...    29   3.9  
At4g14440.1 68417.m02227 enoyl-CoA hydratase/isomerase family pr...    28   6.8  
At1g54970.1 68414.m06278 proline-rich family protein similar to ...    27   9.0  
At1g32150.1 68414.m03955 bZIP transcription factor family protei...    27   9.0  
At1g25280.2 68414.m03138 F-box family protein / tubby family pro...    27   9.0  
At1g25280.1 68414.m03137 F-box family protein / tubby family pro...    27   9.0  

>At4g14430.1 68417.m02226 enoyl-CoA hydratase/isomerase family
           protein low siimilarity to 2-cyclohexenylcarbonyl CoA
           isomerase [Streptomyces collinus] GI:8133118, enoyl-CoA
           isomerase [Escherichia coli] GI:2764829; contains Pfam
           profile PF00378 enoyl-CoA hydratase/isomerase family
           protein
          Length = 240

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 230 DNSVPKILFLNGYSAGVSIVEFYSHEFIIVRVWRG 334
           D  +P I  LNG++A   ++   SH+++ +R  RG
Sbjct: 95  DLPMPTIAALNGHAAAAGLILALSHDYVFMRKDRG 129


>At1g01650.1 68414.m00083 protease-associated (PA) domain-containing
           protein contains protease associated (PA) domain,
           Pfam:PF02225
          Length = 491

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 32  RWSASSASLFDVSLVFSCLCVFPVP*LVFGPKLKVLFQKASCLLHW--HWCYV 184
           RW   +A+LF +S +     +  V  +V  P LKV F   SC   +   W +V
Sbjct: 292 RWRRGAANLFGLSTLMGISLIITVLQIVRVPNLKVGFVLLSCAFMYDIFWVFV 344


>At4g14440.1 68417.m02227 enoyl-CoA hydratase/isomerase family
           protein low similarity to PhaB [Pseudomonas putida]
           GI:3253198, SP|P31551 Carnitine racemase {Escherichia
           coli}; contains Pfam profile PF00378 enoyl-CoA
           hydratase/isomerase family protein
          Length = 238

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 230 DNSVPKILFLNGYSAGVSIVEFYSHEFIIVRVWRG 334
           D  +P I  LNG++A   ++   SH+++ +R  RG
Sbjct: 93  DLPMPTIAALNGHAAASGLMFALSHDYVFMRKDRG 127


>At1g54970.1 68414.m06278 proline-rich family protein similar to
           proline-rich protein GI:170048 from [Glycine max]
          Length = 335

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 660 NPSKDPTPPVVSKCTLTEDKLDSNPRVLTAMGGL 559
           +PS  P PP   K T T       P ++ A+GG+
Sbjct: 184 SPSYSPPPPFAPKPTYTPPTKPYVPEIIKAVGGI 217


>At1g32150.1 68414.m03955 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 389

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 167 SGEDKKPSEIKPSTSDQKPAT 105
           SG++K+P    PSTS   PAT
Sbjct: 9   SGKEKEPKTTPPSTSSSAPAT 29


>At1g25280.2 68414.m03138 F-box family protein / tubby family
           protein similar to Tubby protein homolog (SP:O88808)
           [Rattus norvegicus]; contains Pfam PF00646: F-box domain
           and Pfam PF01167: Tub family;
          Length = 267

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +1

Query: 244 KNLIPQW-----LFCRSLHRRILQPRIYHREGLARRRPQYQGTDTGTAATS 381
           KN  P+W      +C +   R+    + + + +A R+PQ QGT    A TS
Sbjct: 167 KNKQPRWHEQLQCWCLNFRGRVTVASVKNFQLVAARQPQPQGTGAAAAPTS 217


>At1g25280.1 68414.m03137 F-box family protein / tubby family
           protein similar to Tubby protein homolog (SP:O88808)
           [Rattus norvegicus]; contains Pfam PF00646: F-box domain
           and Pfam PF01167: Tub family;
          Length = 445

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +1

Query: 244 KNLIPQW-----LFCRSLHRRILQPRIYHREGLARRRPQYQGTDTGTAATS 381
           KN  P+W      +C +   R+    + + + +A R+PQ QGT    A TS
Sbjct: 345 KNKQPRWHEQLQCWCLNFRGRVTVASVKNFQLVAARQPQPQGTGAAAAPTS 395


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,551,977
Number of Sequences: 28952
Number of extensions: 346653
Number of successful extensions: 1085
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)