Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1476
         (559 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    23   1.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.3  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   1.3  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   5.4  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = +2

Query: 452 DWENPGVT--QLNRLAAHP---PFPAGVIAKRPAPDRPSQ 556
           DW    +T  QL  L   P   P P  V  ++P P RP+Q
Sbjct: 233 DWYKGRLTDEQLKELENPPTPKPRPTKVSRRKPRPPRPTQ 272


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 255  SILKREQKWLRMLDNWEAFMSKNYKKVRERCRKGNRFAV 139
            ++L  +Q  ++  D W  F +K Y+KV     KG +  V
Sbjct: 1860 AVLNGDQLIIKPHDTWADFDNKFYEKVTAYKSKGIKVLV 1898


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 236 CSLFNIDSARQFFYCNN 286
           C LFNID+A  F  C +
Sbjct: 344 CRLFNIDNALLFAICGS 360


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 189 NYKKVRERCRKGNRFAV 139
           NY  V+E  RKG+  AV
Sbjct: 239 NYSAVQEMHRKGHEIAV 255


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,353
Number of Sequences: 336
Number of extensions: 2049
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)