Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1476
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    30   0.27 
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    29   0.46 
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    25   7.5  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   10.0 

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +2

Query: 188  FLLINASQLSSIRSH-FCSLFNIDSARQFFYCNN 286
            F+ ++  Q+ SIR H F SL  I+ A++FF+C++
Sbjct: 940  FMPVDLQQMVSIRLHRFNSLTPIEIAKKFFHCDH 973


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = -3

Query: 332  NSFRKYEEVTKVFNLHCYSKRTVSPSRY*RENRNG---FVCLTTGKRL*ARTTR--KYEK 168
            + F+K E + + FN+ CY KR      + +E  N    F   T   +L  R     KY+K
Sbjct: 867  HEFQKQESLRRKFNIDCYLKRYERALGHLKEMENAFDEFKNFTIQHKLYPRALELYKYDK 926

Query: 167  DVEKVIV 147
            + +K ++
Sbjct: 927  EAQKEVL 933


>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 231 WLRMLDNWEAFMSKNYKKVRERCRK 157
           W    D W  + + +YKKV ER  K
Sbjct: 155 WDAKRDRWNGYDATDYKKVIERYEK 179


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 233 NGFVCLTTGKRL*ARTTRKYEKDVEKVIVSL 141
           N +  L   KR+ A   +  ++D+EKVI+ L
Sbjct: 842 NAYTYLAESKRMLANELQMKQEDLEKVILEL 872


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,346
Number of Sequences: 5004
Number of extensions: 33268
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)