Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1476
         (559 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040654-3|AAK21451.2|  445|Caenorhabditis elegans Hypothetical ...    49   2e-06
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    30   0.98 
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    30   0.98 
AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ...    29   2.3  
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ...    29   2.3  

>AF040654-3|AAK21451.2|  445|Caenorhabditis elegans Hypothetical
           protein R06B10.5 protein.
          Length = 445

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 17/31 (54%), Positives = 25/31 (80%)
 Frame = -2

Query: 246 KREQKWLRMLDNWEAFMSKNYKKVRERCRKG 154
           +RE+KW++MLDNW  FM + ++ V+ RCRKG
Sbjct: 144 RREKKWIQMLDNWRYFMDEKFELVKNRCRKG 174


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 558 CWEGRSGAGLFAITPAGKGGC 496
           C  G SG G +A+ P+G GGC
Sbjct: 171 CGGGSSGGGGYAVAPSGGGGC 191



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 549 GRSGAGLFAITPAGKGGC 496
           G SG G +A+ P+G GGC
Sbjct: 195 GSSGGGGYAVAPSGGGGC 212


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 558 CWEGRSGAGLFAITPAGKGGC 496
           C  G SG G +A+ P+G GGC
Sbjct: 171 CGGGSSGGGGYAVAPSGGGGC 191



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 549 GRSGAGLFAITPAGKGGC 496
           G SG G +A+ P+G GGC
Sbjct: 195 GSSGGGGYAVAPSGGGGC 212


>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1b protein.
          Length = 1021

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 249 LKREQKWLRMLDNWEAFMSKNYKKVRERCRKG 154
           L RE+KWL+M++ W++      KK+ +R  KG
Sbjct: 563 LSREKKWLKMIEVWKS--GGPSKKMEDRIWKG 592


>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1a protein.
          Length = 1085

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 249 LKREQKWLRMLDNWEAFMSKNYKKVRERCRKG 154
           L RE+KWL+M++ W++      KK+ +R  KG
Sbjct: 563 LSREKKWLKMIEVWKS--GGPSKKMEDRIWKG 592


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,017,951
Number of Sequences: 27780
Number of extensions: 190057
Number of successful extensions: 554
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)