Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1475
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 210 1e-55
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 101 1e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 90 2e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 90 3e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 78 1e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 56 4e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 56 6e-09
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 51 1e-07
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 43 4e-05
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha... 29 0.63
SPBP23A10.03c |||ACN9 family mitochondrial protein|Schizosacchar... 27 1.9
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 26 4.5
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 4.5
SPBC800.12c |||ubiquitin family protein, unknown|Schizosaccharom... 26 5.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.9
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.9
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 25 7.8
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 210 bits (513), Expect = 1e-55
Identities = 105/140 (75%), Positives = 115/140 (82%), Gaps = 3/140 (2%)
Frame = -3
Query: 666 LEKSYELPDGQVITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRR---GIRKD 496
LEKSYELPDGQVITIGNERFR PEALF LG L + H ++ + + IRKD
Sbjct: 236 LEKSYELPDGQVITIGNERFRAPEALFQPSALG---LENAGIHEATYNSIMKCDVDIRKD 292
Query: 495 LYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 316
LY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTF
Sbjct: 293 LYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTF 352
Query: 315 QQMWISKQEYDESGPSIVHR 256
QQMWISKQEYDESGP IV+R
Sbjct: 353 QQMWISKQEYDESGPGIVYR 372
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 101 bits (241), Expect = 1e-22
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 3/141 (2%)
Frame = -3
Query: 669 PLEKSYELPDGQVITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRG---IRK 499
P +Y+LPD Q IT+G E F PE LF ++G + HI L + +R
Sbjct: 240 PQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGL---HIQLFKSILLSDIDLRS 296
Query: 498 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 319
LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLST
Sbjct: 297 TLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLST 356
Query: 318 FQQMWISKQEYDESGPSIVHR 256
F+++ I+ +EY I R
Sbjct: 357 FRRLLITSEEYKNDQNVIFRR 377
Score = 30.3 bits (65), Expect = 0.27
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = -1
Query: 686 NWVPGPPSRSLTNFPTVRSSLSETKDSVAQRLSFQPSFLGMEACGIHETTYNSIMKCDV 510
+W P P ++ T+ A + F P +G EA G+H + SI+ D+
Sbjct: 234 SWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDI 292
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 90.2 bits (214), Expect = 2e-19
Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 12/155 (7%)
Frame = -3
Query: 666 LEKSYELPDGQVITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRGIRKDLYA 487
L ++Y LPDG+VI +G+ER+ CPE LF ++G IRK LY
Sbjct: 236 LMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYR 295
Query: 486 NTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGS 340
VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG+
Sbjct: 296 AIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGA 355
Query: 339 ILAS-LSTFQQMWISKQEYDESGPSIVHRSASKRT 238
+LA ++ MW+SK E++E G + + + T
Sbjct: 356 VLADIMAQNDHMWVSKAEWEEYGVRALDKLGPRTT 390
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 89.8 bits (213), Expect = 3e-19
Identities = 55/140 (39%), Positives = 75/140 (53%), Gaps = 11/140 (7%)
Frame = -3
Query: 660 KSYELPDGQVITIGNERFRCPEALF-PTLVLGYGS-LRHPRDHI*LHHEVRRGI------ 505
K +E PDG G ERFR E LF P+ + P+ + LH V + I
Sbjct: 279 KPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSE 338
Query: 504 -RKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSIL 334
R L N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSIL
Sbjct: 339 LRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSIL 398
Query: 333 ASLSTFQQMWISKQEYDESG 274
ASL FQ +W+SKQEYDE G
Sbjct: 399 ASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 77.8 bits (183), Expect = 1e-15
Identities = 38/81 (46%), Positives = 55/81 (67%), Gaps = 3/81 (3%)
Frame = -3
Query: 507 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSI 337
IR L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSI
Sbjct: 342 IRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSI 400
Query: 336 LASLSTFQQMWISKQEYDESG 274
L+SL TF Q+WIS+QEY+E G
Sbjct: 401 LSSLGTFHQLWISRQEYEEHG 421
Score = 30.7 bits (66), Expect = 0.21
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 663 EKSYELPDGQVITIGNERFRCPEALF 586
E +E PDG + G ER++ PE LF
Sbjct: 261 ESEFEFPDGSRMMFGAERYQIPEHLF 286
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 56.4 bits (130), Expect = 4e-09
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Frame = -3
Query: 630 ITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRG---IRKDLYANTVLSGGTT 460
I +G ERF PE F + L P + + + V+ +RK LY N VLSGG+T
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLT-PLPEL-VDNVVQSSPIDVRKGLYKNIVLSGGST 337
Query: 459 MYPGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLS 322
++ +R+Q+++ + + + +I+ ++ +VW GGS+LA
Sbjct: 338 LFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTP 397
Query: 321 TFQQMWISKQEYDESGPSIVHR 256
F +K +Y+E G SI R
Sbjct: 398 EFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 55.6 bits (128), Expect = 6e-09
Identities = 36/127 (28%), Positives = 56/127 (44%)
Frame = -3
Query: 636 QVITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRGIRKDLYANTVLSGGTTM 457
QV+ + NERF PE LF + P + I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 456 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 277
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390
Query: 276 GPSIVHR 256
G +I+ R
Sbjct: 391 GANIMTR 397
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 51.2 bits (117), Expect = 1e-07
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Frame = -3
Query: 615 ERFRCPEALFPTLVLGY---GSLRHPRDHI*LHHEVRRGIRKDLYANTVLSGGTTMYPGI 445
E+ R PE +F ++G G L R I H + ++ L +N +++GG PG+
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRS-ILQRHSLEE--QQKLVSNVLITGGLGSLPGM 650
Query: 444 ADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 265
R+++E+T++ P I + W G S + F+ ++++EY E GP
Sbjct: 651 ETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEY 710
Query: 264 V 262
+
Sbjct: 711 I 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.2 bits (97), Expect = 4e-05
Identities = 19/83 (22%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = -3
Query: 501 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 331
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 330 SLSTFQQMWISKQEYDESGPSIV 262
+ ++WI ++ G ++
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVL 609
>SPAC57A10.02 |cdr2||GIN4 family protein kinase
Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 29.1 bits (62), Expect = 0.63
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -2
Query: 670 PPREVLRTSRRSGHHYRKRKIPLPRGSLSNPR 575
PPR+ R + R H R + PRGS NPR
Sbjct: 507 PPRK--RVTSRMSEHTGNRVVSFPRGSAFNPR 536
>SPBP23A10.03c |||ACN9 family mitochondrial
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 115
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +1
Query: 535 YVVSWMPQASIPKNEGWKESLWATESFVSDSDDLTVGKFVRL 660
++ SW A +NE WK+ ++ + +D +G+ L
Sbjct: 63 FLSSWERYADALENESWKQEKYSNTDLLESLNDQQIGQLYEL 104
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 631 HHYRKRKIPLPRGSLSNPRSWVWKL 557
+H+R +KIPL +L P S V KL
Sbjct: 167 NHFRSKKIPLTEFALRYPESAVSKL 191
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = -3
Query: 354 WIGGSILASLSTFQQM---WISKQEYDESGPSIVH 259
++GGSI+A S + + +++ +EY + GP+ +H
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIH 520
>SPBC800.12c |||ubiquitin family protein,
unknown|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 671 PPSRSLTNFPTVRSSLSETKDSVAQRLSFQPS 576
PP + + V+S++ E K+ +A +LS QPS
Sbjct: 67 PPIQQASTEINVQSTILELKEVLASQLSTQPS 98
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 362 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 267
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 429 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 319
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.8
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -2
Query: 472 RWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVDLET 293
RWY PW + KG+ + +E + SSR + + W+D YL +++D+ +
Sbjct: 483 RWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEIDMVS 533
Query: 292 GV 287
V
Sbjct: 534 AV 535
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 671 PPSRSLTNFPTVRSSLSETKDSVAQRLSFQPSFLGMEACG 552
P + NF + +SLS KD+ A S SFL E G
Sbjct: 351 PNTLIFQNFSSPSTSLSAPKDTPAVIQSINTSFLNNERAG 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,240
Number of Sequences: 5004
Number of extensions: 58437
Number of successful extensions: 198
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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