Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1475
(689 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 220 1e-57
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 220 1e-57
SB_56| Best HMM Match : Actin (HMM E-Value=0) 220 1e-57
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 219 1e-57
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 218 4e-57
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 217 5e-57
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 198 3e-51
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 62 5e-10
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 56 2e-08
SB_54| Best HMM Match : Actin (HMM E-Value=0) 45 7e-05
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 33 0.22
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 29 2.7
SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 8.2
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 220 bits (537), Expect = 1e-57
Identities = 110/137 (80%), Positives = 114/137 (83%)
Frame = -3
Query: 666 LEKSYELPDGQVITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRGIRKDLYA 487
LEKSYELPDGQVITIGNERFRCPEA+F LG S + IRKDLYA
Sbjct: 199 LEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYA 258
Query: 486 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 307
NTVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 259 NTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 318
Query: 306 WISKQEYDESGPSIVHR 256
WISKQEYDESGP+IVHR
Sbjct: 319 WISKQEYDESGPAIVHR 335
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 220 bits (537), Expect = 1e-57
Identities = 110/137 (80%), Positives = 114/137 (83%)
Frame = -3
Query: 666 LEKSYELPDGQVITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRGIRKDLYA 487
LEKSYELPDGQVITIGNERFRCPEA+F LG S + IRKDLYA
Sbjct: 237 LEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYA 296
Query: 486 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 307
NTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 297 NTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 356
Query: 306 WISKQEYDESGPSIVHR 256
WISKQEYDESGPSIVHR
Sbjct: 357 WISKQEYDESGPSIVHR 373
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 220 bits (537), Expect = 1e-57
Identities = 110/137 (80%), Positives = 114/137 (83%)
Frame = -3
Query: 666 LEKSYELPDGQVITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRGIRKDLYA 487
LEKSYELPDGQVITIGNERFRCPEA+F LG S + IRKDLYA
Sbjct: 236 LEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYA 295
Query: 486 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 307
NTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 296 NTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 355
Query: 306 WISKQEYDESGPSIVHR 256
WISKQEYDESGPSIVHR
Sbjct: 356 WISKQEYDESGPSIVHR 372
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 219 bits (536), Expect = 1e-57
Identities = 110/137 (80%), Positives = 114/137 (83%)
Frame = -3
Query: 666 LEKSYELPDGQVITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRGIRKDLYA 487
LEKSYELPDGQVITIGNERFRCPEA+F LG S + IRKDLYA
Sbjct: 237 LEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYA 296
Query: 486 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 307
NTVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 297 NTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 356
Query: 306 WISKQEYDESGPSIVHR 256
WISKQEYDESGPSIVHR
Sbjct: 357 WISKQEYDESGPSIVHR 373
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 218 bits (532), Expect = 4e-57
Identities = 109/137 (79%), Positives = 114/137 (83%)
Frame = -3
Query: 666 LEKSYELPDGQVITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRGIRKDLYA 487
LEKSYELPDGQVITIGNERFRCPEA+F LG S + IRKDLYA
Sbjct: 236 LEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYA 295
Query: 486 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 307
NTVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 296 NTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 355
Query: 306 WISKQEYDESGPSIVHR 256
WISKQEYDESGPSIVHR
Sbjct: 356 WISKQEYDESGPSIVHR 372
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 217 bits (531), Expect = 5e-57
Identities = 108/137 (78%), Positives = 114/137 (83%)
Frame = -3
Query: 666 LEKSYELPDGQVITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRGIRKDLYA 487
+EKSYELPDGQVITIGNERFRCPEAL LG S + IRKDLYA
Sbjct: 210 IEKSYELPDGQVITIGNERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYA 269
Query: 486 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 307
NTV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM
Sbjct: 270 NTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 329
Query: 306 WISKQEYDESGPSIVHR 256
WISKQEYDESGP+IVHR
Sbjct: 330 WISKQEYDESGPAIVHR 346
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 198 bits (483), Expect = 3e-51
Identities = 97/142 (68%), Positives = 115/142 (80%), Gaps = 3/142 (2%)
Frame = -3
Query: 672 PPLEKSYELPDGQVITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRR---GIR 502
P LEK+YELPDGQVI+IGNERFRCPEA+F LG + P H +++ + + IR
Sbjct: 8 PILEKTYELPDGQVISIGNERFRCPEAMFQPAFLG---MEAPGIHEAIYNCIMKCDVDIR 64
Query: 501 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLS 322
KDLY+N VLSGG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLS
Sbjct: 65 KDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLS 124
Query: 321 TFQQMWISKQEYDESGPSIVHR 256
TFQQMWI+K+EY E GP IVHR
Sbjct: 125 TFQQMWIAKEEYHEYGPPIVHR 146
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 64.5 bits (150), Expect = 8e-11
Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 29/160 (18%)
Frame = -3
Query: 666 LEKSYELPDGQVITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRGIRKDLYA 487
L + Y LPDG+V+ + ERF PEALF ++ + R + Y
Sbjct: 240 LVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYK 299
Query: 486 NTVLSGGTTMYPGIADRMQKEITAL---------------------APST-----MKIKI 385
+ VLSGG+TMYPG+ R+++EI L P T K KI
Sbjct: 300 HIVLSGGSTMYPGLPSRLEREIKQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKI 359
Query: 384 -IAPP-ERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 274
I P RK+ V++GG++LA + W++++EY+E G
Sbjct: 360 RIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 61.7 bits (143), Expect = 5e-10
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 16/97 (16%)
Frame = -3
Query: 507 IRKDLYANTVLSGGTTMYPGIADRMQKEITA----------------LAPSTMKIKIIAP 376
+R+ LY N VLSGG+TM+ R+Q++I + P ++ ++I+
Sbjct: 238 VRRPLYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISH 297
Query: 375 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 265
++Y+VW GGS+LAS F + +K +YDE GPSI
Sbjct: 298 HMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSI 334
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/64 (37%), Positives = 44/64 (68%), Gaps = 3/64 (4%)
Frame = -3
Query: 507 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSI 337
IR L+ + +++GG T+ G +R+ +E+ + P +M++K+I+ E++++ WIGGSI
Sbjct: 167 IRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSI 226
Query: 336 LASL 325
LASL
Sbjct: 227 LASL 230
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 44.8 bits (101), Expect = 7e-05
Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = -3
Query: 687 ELGTGPPLEKSYELPDGQVITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRG 508
E T E Y LPDGQ I IG+ERFR E LF +LG RD +H + +
Sbjct: 2274 EAETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLG-------RDIDGIHESIFKS 2326
Query: 507 IRK-------DLYANTVLSG 469
I+K +L+ N VLSG
Sbjct: 2327 IKKCDIDLRAELFHNIVLSG 2346
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Frame = -3
Query: 504 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSVW 352
RK L N VL GGT M PG R+ +EI L S +K+ PP + W
Sbjct: 74 RKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAW 133
Query: 351 IGGSILASLSTFQQMWISKQEYDE 280
+GG+I SL +++ Y +
Sbjct: 134 LGGAIFGSLEVLADRSTTRERYQQ 157
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 678 TGPPLEKSYELPDGQVITIGNERFRCPEALF-PTLVL 571
T L K Y LPDGQ+I+IG E E LF P L+L
Sbjct: 863 TNEGLTKFYTLPDGQMISIGYECISSMEPLFRPDLLL 899
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -3
Query: 507 IRKDLYANTVLSGGTTMYPG 448
+R+ LY+N VLSGG+T++ G
Sbjct: 272 LRRVLYSNIVLSGGSTLFKG 291
>SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = -3
Query: 660 KSYELPDGQVITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRGIRKDLYANT 481
K+ PD ++ N +F TL LG+G+L ++ +H++V KD Y
Sbjct: 218 KTLFTPDWGLLLDANIWKDAATQMFFTLSLGFGALIAFASYMPMHNQV----MKDGYTVV 273
Query: 480 VLSGGTTMYPGI 445
+++ GT+++ GI
Sbjct: 274 LVNCGTSLFAGI 285
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 486 NTVLSGGTTMYPGIADRMQKEITALAP 406
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1973
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 338 IDPPIHTEYFLSGGAMILIFIVDGARAVISFCIRSAIPGYMV-VPPD-NTVLAYKSLRM 508
+DPP+ +Y L+GG ++ + FCI G++V PP+ N+ + R+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCI---FQGFVVPTPPECNSAIVLPDARI 813
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,666,079
Number of Sequences: 59808
Number of extensions: 501388
Number of successful extensions: 1523
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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