Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1475
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             193   2e-51
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.3  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.3  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  193 bits (470), Expect = 2e-51
 Identities = 98/123 (79%), Positives = 101/123 (82%)
 Frame = -3

Query: 666 LEKSYELPDGQVITIGNERFRCPEALFPTLVLGYGSLRHPRDHI*LHHEVRRGIRKDLYA 487
           LEKSYELPDGQVITIGNERFRCPEALF    LG  +            +    IRKDLYA
Sbjct: 11  LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYA 70

Query: 486 NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM 307
           NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVWIGGSILASLSTFQQM
Sbjct: 71  NTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQM 130

Query: 306 WIS 298
           WIS
Sbjct: 131 WIS 133


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 481 RIVRWYHHVPWNRRPYAK 428
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 481 RIVRWYHHVPWNRRPYAK 428
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = +1

Query: 175 LTEITSLN*AAGRGLLEAATRGAFRSTPVYNGGARLVVLLFRDPHLLEGREG 330
           + E+   N     GLL     G + S   +  G   + ++ +DP  L+   G
Sbjct: 310 VAEVMDRNGVLFFGLLSDLAIGCWNSEHFFEYGGNNIEIIVKDPETLQFPSG 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,498
Number of Sequences: 438
Number of extensions: 4554
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)