Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1474
         (535 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos t...    43   0.005
UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse tr...    36   0.44 
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea...    36   0.77 
UniRef50_UPI0000F33B2A Cluster: UPI0000F33B2A related cluster; n...    34   1.8  
UniRef50_UPI0000F329BA Cluster: LOC534369 protein; n=1; Bos taur...    34   2.3  
UniRef50_UPI0000F1FDAD Cluster: PREDICTED: similar to reverse tr...    33   3.1  
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea...    32   7.2  
UniRef50_Q9NX78 Cluster: Uncharacterized protein C14orf101; n=24...    32   9.5  

>UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos
           taurus|Rep: Reverse transcriptase-like - Bos taurus
           (Bovine)
          Length = 335

 Score = 42.7 bits (96), Expect = 0.005
 Identities = 23/60 (38%), Positives = 35/60 (58%)
 Frame = -3

Query: 455 LSFFGHISRRVNDSIERLLVQGKVEDTRLRGKLHMR*TDQVKSAIGGCLHECTRLTTNRE 276
           L +FGH+ RR  DS+E+ L+ GK+E  R RG+  MR  D + +++   L     L  +RE
Sbjct: 259 LQYFGHLMRRA-DSLEKTLMLGKIEGRRRRGRQRMRWLDGIINSMDMGLGGLRELVMDRE 317


>UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse
           transcriptase-like; n=6; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to reverse
           transcriptase-like - Strongylocentrotus purpuratus
          Length = 415

 Score = 36.3 bits (80), Expect = 0.44
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = -3

Query: 455 LSFFGHISRRVNDSIERLLVQGKVEDTRLRGKLHMR*TDQVKSAIGGCLHECTRLTTNRE 276
           L +FGHI R     +   +++ +VE  R RG+   +  D +K   G    E  RL  +R 
Sbjct: 332 LGYFGHILRGSGSPLAAQIIESQVEGKRKRGRQRKQWFDNIKEWTGLTYTEAKRLAQDRN 391

Query: 275 E*RLVVR 255
             R   R
Sbjct: 392 NWRKTTR 398


>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
            endonuclease-reverse transcriptase; n=2;
            Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
            endonuclease-reverse transcriptase - Strongylocentrotus
            purpuratus
          Length = 958

 Score = 35.5 bits (78), Expect = 0.77
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = -3

Query: 455  LSFFGHISRRVNDSIERLLVQGKVEDTRLRGKLHMR*TDQVKSAIGG----CLHECTRLT 288
            L +FGHI+R  +     +L+ G +   R RG+   R TD +K+         L + TRLT
Sbjct: 860  LRYFGHINRMNSKRYPHILLNGNIHGKRPRGRPAKRWTDCIKADCKNRQVDSLTKATRLT 919

Query: 287  TNREE*RLVVR 255
             +R+  + +V+
Sbjct: 920  EDRKVWQAIVK 930


>UniRef50_UPI0000F33B2A Cluster: UPI0000F33B2A related cluster; n=3;
           Bos taurus|Rep: UPI0000F33B2A UniRef100 entry - Bos
           Taurus
          Length = 253

 Score = 34.3 bits (75), Expect = 1.8
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = -3

Query: 455 LSFFGHISRRVNDSIERLLVQGKVEDTRLRGKLHMR*TDQVKSAI 321
           L +FGH  RR  DS+E+ L+ GK+E  R RG+  M+  D + +++
Sbjct: 181 LQYFGH--RRA-DSLEKTLMLGKIEGKRRRGQKRMKWLDGITNSM 222


>UniRef50_UPI0000F329BA Cluster: LOC534369 protein; n=1; Bos
           taurus|Rep: LOC534369 protein - Bos Taurus
          Length = 87

 Score = 33.9 bits (74), Expect = 2.3
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = -3

Query: 455 LSFFGHISRRVNDSIERLLVQGKVEDTRLRGKLHMR*TDQVKSAIGGCLHECTRL 291
           L +FGH+ RRV DS+E+ L+ G +   R  G+  MR  + +  +    L E   L
Sbjct: 7   LQYFGHLMRRV-DSLEKTLMLGGIGGKRRSGRQRMRWLNDITDSNDVSLSELREL 60


>UniRef50_UPI0000F1FDAD Cluster: PREDICTED: similar to reverse
           transcriptase-like; n=1; Danio rerio|Rep: PREDICTED:
           similar to reverse transcriptase-like - Danio rerio
          Length = 249

 Score = 33.5 bits (73), Expect = 3.1
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = -3

Query: 455 LSFFGHISRRVNDSIERLLVQGKVEDTRLRGKLHMR*TDQVKSAIGGCLHECTRLTTNRE 276
           LSFFGHI +   +S+E     G V  +R RG+   R  D +K+     + E      NR+
Sbjct: 191 LSFFGHIMQ--TNSMETAFTLGAVSGSRRRGRQRTRWLDTIKTDTNLNMEELKEAVRNRK 248


>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial; n=7;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial -
           Strongylocentrotus purpuratus
          Length = 787

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = -3

Query: 512 EEVQEAVS--SVFWRSVHGRILSFFGHISRRVNDSIERLLVQGKVEDTRLRGKLHMR*TD 339
           EE+++ ++  S     +  R L +FGH+ R  +  +     Q      R RG+   R  D
Sbjct: 426 EEIRQRLNIPSTICEEITKRCLKWFGHVLRMPHHRLPYQAFQNDFNGRRPRGRPPKRWKD 485

Query: 338 QVKSAIGGCLHECTRLTTNREE*RLVVR 255
           QV+  +G    E  +   +R +  ++ R
Sbjct: 486 QVQYDVGLSTQEAEQRAQDRSDWNMISR 513


>UniRef50_Q9NX78 Cluster: Uncharacterized protein C14orf101; n=24;
           Tetrapoda|Rep: Uncharacterized protein C14orf101 - Homo
           sapiens (Human)
          Length = 707

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 26/109 (23%), Positives = 43/109 (39%)
 Frame = +3

Query: 54  GGINFVHIHKTSYYHSTWSTNSDLTRHSFVVLVIRAASLLNLYLCRITLVRAIVVVIHHY 233
           GGI    +   S     WS  +++   + + + +  A  ++         R+ V  I  +
Sbjct: 122 GGILAAGVFSFSRLTWQWSIAAEVFSLNNLFVGLLMALTVHFEEAATAKERSKVAKIGAF 181

Query: 234 CCGQMLCPHDQSLLLPICGEPGTLMQTAANS*LDLVSLSHVQLSTQSGV 380
           CCG  LC     +L  +C  P  L Q      L L SL  + L   +G+
Sbjct: 182 CCGLSLCNQHTIILYVLCIIPWILFQLLKKKELSLGSLLKLSLYFSAGL 230


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,728,317
Number of Sequences: 1657284
Number of extensions: 11277172
Number of successful extensions: 26056
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26053
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)