Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1474
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    29   0.58 
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   3.1  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   4.1  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    25   7.1  

>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 28.7 bits (61), Expect = 0.58
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 261 DQSLLLPICGEPGTLMQTAANS*LDLVSLSHVQLSTQSGV 380
           D S++ PIC   GT++ T  ++ LD+V  +  Q++T S +
Sbjct: 171 DISVIAPICSALGTVVATTISTPLDIVK-TRYQVATSSAM 209


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 406 RSMESFTRREICPKNDSMRPCTERQKTLLTASC 504
           + +E   + ++C KN+ M+   E+ K LL   C
Sbjct: 146 KCIEQLIQIKVCMKNEKMKNLMEQLKPLLQTEC 178


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 365 HAVWCLLLCPEREGALWSHLLAGRYVQKTIVCAHA 469
           H V C   CP+R+GA  +  L GR+     +CA A
Sbjct: 246 HEVICCAFCPDRDGAFCT-TLDGRWCH--TICAIA 277


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 413 WSHLLAGRYVQKTIVCA 463
           WSH ++  ++ K IVCA
Sbjct: 519 WSHYISASFLSKWIVCA 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,448
Number of Sequences: 5004
Number of extensions: 44645
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)