Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1474
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0038 - 7631462-7634428,7635975-7636250                           29   3.1  
09_02_0470 + 9629062-9629355,9629948-9630893,9630948-9631102,963...    28   5.4  
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070...    27   7.2  
01_05_0579 + 23393632-23393734,23393765-23394513,23395958-233963...    27   9.5  

>11_02_0038 - 7631462-7634428,7635975-7636250
          Length = 1080

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 491 SSVFWRSVHGRILSFFGHISRRVNDSIERLL 399
           S VF R  H R+L   G I +R+ DSI  L+
Sbjct: 636 SDVFMRFPHLRVLDLTGSIVQRIPDSINSLI 666


>09_02_0470 +
           9629062-9629355,9629948-9630893,9630948-9631102,
           9631299-9631358,9633374-9633444,9633626-9633663,
           9633824-9633876,9633970-9635235,9635632-9635672,
           9636821-9636887
          Length = 996

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +3

Query: 129 RHSFVVLVIRAASLLNLYLCRITLVRAIVVVIHHYCCGQMLCPHDQSLLLPI 284
           R  + +LVI +      Y+C   +VR ++++I  Y      C    +  LP+
Sbjct: 483 RRKYGILVILSFMFFPFYVCSWCVVRNLLMMIDDYSSSHAKCGRYSNTQLPV 534


>02_05_0877 +
           32403363-32404662,32406545-32406630,32406709-32407077,
           32407174-32407257,32407362-32407784,32408368-32408434,
           32409238-32409430,32409577-32409680,32409787-32409990,
           32410174-32410427,32410511-32410735,32410812-32411033,
           32411109-32411162,32411337-32411402,32411496-32411633,
           32411979-32412032,32412334-32412393,32412975-32413340,
           32413415-32413582
          Length = 1478

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 246 MLCPHDQSLLLPICGEPGTLMQTAANS*LDLVSL 347
           +LCP ++  L P+ GEPG   QTA    L  V L
Sbjct: 353 VLCPKEKGALKPVKGEPG---QTAHGGNLKFVHL 383


>01_05_0579 +
           23393632-23393734,23393765-23394513,23395958-23396315,
           23396830-23396852
          Length = 410

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 369 AWKVAHAIN*PGQVSYWRLFA*VYQAHHKSGGVAIGREGIASAHS 235
           AW+        GQ+  W        AHH   G  +GREG  +AH+
Sbjct: 109 AWQEDGFAGPQGQLLRWLAKERDSVAHHGGAGEDLGREGGGTAHA 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,937,743
Number of Sequences: 37544
Number of extensions: 338146
Number of successful extensions: 741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)