Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1474
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               29   1.8  
SB_51327| Best HMM Match : DMA (HMM E-Value=0.00024)                   29   3.2  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   4.2  
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   4.2  
SB_24448| Best HMM Match : Extensin_2 (HMM E-Value=1.3)                28   5.5  
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   7.3  

>SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 348 SHVQLSTQSGVFYFALNEKALYGVIYSPGD 437
           SHV     +   Y  +N K LYG +YSPGD
Sbjct: 220 SHVLDPKATKELYPLMNVKDLYGTLYSPGD 249


>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 225  HHYCCGQMLCPHDQSLLLPICGE 293
            H YC G+++   +Q L+LP CG+
Sbjct: 1022 HKYCYGRIIPKREQCLMLPRCGK 1044


>SB_51327| Best HMM Match : DMA (HMM E-Value=0.00024)
          Length = 236

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 186 CRITLVRAIVVVIHHYCCGQMLCPHDQSLLLPICGEPGTL 305
           C   L+ AI V+           PH Q  ++P  GEPGT+
Sbjct: 75  CNGNLMHAIEVITQCETTSSRQSPHLQPPVIPSSGEPGTM 114


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 235  AVGRCYALTTNRYSSRFVVSLVHSCKQPPIADLTWSVY 348
            AV RCY     R    F +   + C+  P A +++SVY
Sbjct: 988  AVERCYRKANRRGFRVFSMQAHNECRSGPTAHISYSVY 1025


>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 309

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 405 ALYGVIYSPGDMSKKR*Y-APMHRTPKNAAYCLLYFLINDGGM 530
           AL+G+++ P DM K R   APM R P+ A   L   L N+G M
Sbjct: 232 ALWGLMF-PVDMLKTRVQIAPMGRYPRGARDVLKEVLCNEGPM 273


>SB_24448| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
          Length = 282

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 225 HHYCCGQMLCPHDQSLLLPICGE 293
           H YC G+++   +Q L LP CG+
Sbjct: 149 HKYCYGRIIPKREQCLKLPRCGK 171


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 225 HHYCCGQMLCPHDQSLLLPICGE 293
           H YC G+++   +Q L LP CG+
Sbjct: 792 HKYCYGRIIPKREQCLKLPRCGK 814



 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 225  HHYCCGQMLCPHDQSLLLPICGE 293
            H YC G+++   +Q L LP CG+
Sbjct: 1320 HKYCYGRIIPKREQCLKLPRCGK 1342


>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 368  RGKLHMR*TDQVKSAIGGCLHECTRLTTNRE 276
            +GKL ++  D++   IGGC H+ T +   RE
Sbjct: 1033 KGKLELKGEDEI--VIGGCFHDPTAVVAVRE 1061


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 235  AVGRCYALTTNRYSSRFVVSLVHSCKQPPIADLTWSVY 348
            AV RCY     R    F +   + C+  P A +T+S+Y
Sbjct: 1109 AVMRCYHQANRRGYRVFSMQAHNDCRSGPTAHVTYSMY 1146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,129,906
Number of Sequences: 59808
Number of extensions: 380687
Number of successful extensions: 922
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)