Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1474
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-17|CAA19463.2|  826|Caenorhabditis elegans Hypothetical...    29   2.1  
AJ132698-1|CAA10734.1|  826|Caenorhabditis elegans centaurin bet...    29   2.1  
AC006661-10|AAF39887.1|  843|Caenorhabditis elegans Hypothetical...    28   3.7  
AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine re...    28   4.8  
Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical pr...    27   6.4  

>AL023828-17|CAA19463.2|  826|Caenorhabditis elegans Hypothetical
           protein Y17G7B.15a protein.
          Length = 826

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 229 IIAVGRCYALTTNRYSSRFVVSLVHSCKQPPIADLTWSVYR 351
           + AVG C+A TT  Y +   +++ H+ K   I D  W++ R
Sbjct: 172 LTAVGTCFAHTTLDYVAN--INIAHAHKDHMILDALWTLVR 210


>AJ132698-1|CAA10734.1|  826|Caenorhabditis elegans centaurin beta
           1A protein.
          Length = 826

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 229 IIAVGRCYALTTNRYSSRFVVSLVHSCKQPPIADLTWSVYR 351
           + AVG C+A TT  Y +   +++ H+ K   I D  W++ R
Sbjct: 172 LTAVGTCFAHTTLDYVAN--INIAHAHKDHMILDALWTLVR 210


>AC006661-10|AAF39887.1|  843|Caenorhabditis elegans Hypothetical
           protein H20J04.1 protein.
          Length = 843

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 45  KVGGGINFVHIHKTSYYHSTWSTNSDL 125
           KV GGI FV++HKT +  +T  T  DL
Sbjct: 551 KVKGGIGFVNLHKTMF--ATGETTVDL 575


>AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein100 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +3

Query: 99  STWSTNSDLTRHSFVVLVIRAASLLNLYLCRITLVRAIVVVIHHYC 236
           S W    D+T  S ++   R AS L +++  + LV    + I  +C
Sbjct: 92  SLWKIYFDITLWSIIIHFRRCASWLGIFMATVRLVLVKKLSISRFC 137


>Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical
           protein K06B4.1 protein.
          Length = 371

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +3

Query: 168 LLNLYLCRITLVRAIVVVIHHYCCGQMLCPHDQSLLLPIC 287
           +L+ + C++   R +V  + HYCC +    +++ ++LP C
Sbjct: 19  VLSCFACKMFFHRMVVENL-HYCCQKFNKCYEKFIILPKC 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,013,304
Number of Sequences: 27780
Number of extensions: 266385
Number of successful extensions: 597
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)