Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1474
         (535 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   1.5  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   2.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   4.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.0  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 370 CVESCTCDKLTRSSQLLAAVCMSVPGSPQ 284
           CV + T D+L      + +VCM   G+ Q
Sbjct: 13  CVSAMTLDELKSGLHTVQSVCMKEIGTAQ 41


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 240 GQMLCPHDQSLLLPICGEPGTLMQT 314
           G++ CP  ++   PICG  G +  T
Sbjct: 63  GRVSCPVLRAYTCPICGACGDIAHT 87


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 36  SCLKVGGGINFVHIHKTSYYHSTWSTNSDLTRHSFVVLVI--RAASLLNLY 182
           +C+ +    + VH H  + +    STN  +TR+   + +I  +  S L +Y
Sbjct: 44  ACILIKDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKLKIY 94


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 36  SCLKVGGGINFVHIHKTSYYHSTWSTNSDLTRHSFVVLVI--RAASLLNLY 182
           +C+ +    + VH H  + +    STN  +TR+   + +I  +  S L +Y
Sbjct: 27  ACILIKDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFLISQQKTSKLKIY 77


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -2

Query: 339  PGQVSYWRLFA*VYQAHHKSGGVAIGREGIASAHSNNG 226
            P +   ++ F      H  + G  +G    ASAHS +G
Sbjct: 1739 PSKAMQFQTFPHPGNGHSGTMGPPVGHPTNASAHSRSG 1776


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,265
Number of Sequences: 438
Number of extensions: 3209
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)