Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1474
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73880.1 68414.m08556 UDP-glucoronosyl/UDP-glucosyl transfera...    31   0.37 
At1g23560.1 68414.m02964 expressed protein contains Pfam profile...    30   0.84 
At3g21310.1 68416.m02692 expressed protein contains Pfam profile...    27   5.9  
At1g21680.1 68414.m02713 expressed protein similar to TolB prote...    27   5.9  

>At1g73880.1 68414.m08556 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 473

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 17/70 (24%), Positives = 28/70 (40%)
 Frame = +2

Query: 167 PPESLSLSYHSC*SDRGRYSPLLLWADAMPSRPIATPPDLW*AWYTHANSRQ*LT*PGQF 346
           PP    L  H+       ++PL+ W  + PS P+A   D +  W  +    +    P   
Sbjct: 92  PPSGFPLMIHAL---GNLHAPLISWITSHPSPPVAIVSDFFLGWTKNLGIPRFDFSPSAA 148

Query: 347 IACATFHAVW 376
           I C   + +W
Sbjct: 149 ITCCILNTLW 158


>At1g23560.1 68414.m02964 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220
          Length = 332

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +2

Query: 152 HSCRKPPESLSLSYHSC*SDRGRYSPLLLWADAMPSRPIATPPDLW*AWY 301
           H C +        YHSC + RGR    +          + TPP L  +WY
Sbjct: 214 HLCDRSKPKSQKDYHSCSNGRGRIGSKVTMDQMFQPSALLTPPPL--SWY 261


>At3g21310.1 68416.m02692 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 383

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 250 YALTTNRYSSRFVVSLVHSCKQPPIADLTWSVYRMCNFPRSLVSSTL 390
           Y  T   Y S F  S V   +Q P   + W    MC+  R L+++ L
Sbjct: 146 YVHTLPNYRSDFPSSSVFYRRQIPSQHVAWGEMSMCDAERRLLANAL 192


>At1g21680.1 68414.m02713 expressed protein similar to TolB protein
           precursor (SP:Q9ZDM5) {Rickettsia prowazekii}; ESTs
           gb|N96028, gb|F14286, gb|T20680, gb|F14443, gb|AA657300
           and gb|N65244 come from this gene
          Length = 706

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 170 PESLSLSYHSC*SD-RGRYSPLL 235
           P+S  + YHSC  D  GR SPLL
Sbjct: 372 PDSSRVGYHSCRGDANGRRSPLL 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,255,098
Number of Sequences: 28952
Number of extensions: 250963
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)