Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1473
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    29   0.45 
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   1.8  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   2.4  
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    27   3.2  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   4.2  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    26   5.5  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   5.5  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   7.3  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    25   9.7  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   9.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.7  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    25   9.7  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   9.7  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -1

Query: 645 DGFVEVLPYDAV-----HKRLERVGVLAVDVHDWAAAALFSQT 532
           DGFV++LPYD V     +  L R+G+ +     W  A  F +T
Sbjct: 247 DGFVKILPYDRVFSDAKNSNLTRIGISSKT--SWCIATSFGET 287


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 380 YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 508
           YL+ +L    PN  Y    Q A +  +DY   E IRI+E   V
Sbjct: 32  YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 626 SHMTRFTNDSNELVYSLWMFMIGQ 555
           SH  +F ND  E  Y  W F+  Q
Sbjct: 203 SHTYKFVNDKGEFYYCKWHFITNQ 226


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 508 GMNNEYRISLAKKGGGCPIMNIHS 579
           G++NE  I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +2

Query: 266 DTMKLIVNWSGK-EFLRETW---TRFVEDSFPIVNDQEVMDVY 382
           D ++ +  W  K + ++  W   T   E SFP++ND+E + V+
Sbjct: 230 DDLETLPKWPDKVKKMQRNWIGRTTGFEISFPLLNDKETLTVF 272


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 281 LTSWYRVSHANFFKKGKFLVFARS*KGIFGNHV 183
           +  W+R+SH   F++  FL++      IF  H+
Sbjct: 556 MLKWFRLSHVLRFERLAFLLYENHFLEIFNRHL 588


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 18  PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 161
           P+ M + S  P+     VY+    + L C   NAK  + LV+ + EE+
Sbjct: 387 PVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKGAETLVQVKMEEE 434


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -3

Query: 487 SDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 389
           +D   GH +  PP+ +   +++A + +C  ++G
Sbjct: 558 ADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIG 590


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 72  YDNKYYKNLGCLIK-NAKRKKHLVEHEQEEKQWDLLDNYMVAED 200
           Y+   Y  L  L K + K+ K + +H+   + W LLD     +D
Sbjct: 238 YEESNYTRLPKLSKKDLKKSKRVKKHDYGGEDWSLLDRKFHDDD 281


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +2

Query: 224  PKTYPF*RNSRVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQ 364
            P T  + R+S +  +T  L ++ S K+F+RET+T   + + P V D+
Sbjct: 1018 PATPSWTRDSSLIKETTNLNLD-SDKKFVRETYTSSNQTNEPDVYDK 1063


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 345  SPL*TTKR*WTCTSSPTSNPHAPTGATSSSLN 440
            SP+    R  +  + P SNP+ P    SS++N
Sbjct: 964  SPVAAASRISSSPNMPPSNPYTPIAVASSTVN 995


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 560 GQPPPFLARLILYSLFMPRRMAPQ 489
           G PPP    L+ Y + MP  + PQ
Sbjct: 283 GSPPPMPIELLSYIINMPPPLLPQ 306


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 550 GGCPIMNIHSEYTNSFESFVNRVIWENFYK 639
           GG P+  + SE  + F    ++ I+E +YK
Sbjct: 399 GGKPLKEVFSEILDLFRYIASKDIFEAYYK 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,659
Number of Sequences: 5004
Number of extensions: 65073
Number of successful extensions: 204
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)