Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1472
         (621 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.7  
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    22   3.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   6.3  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   6.3  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 418 PRANERSSSLTDLSTIMRSGICVTATTN 335
           P   +RS S+TDLST  + G  V  + N
Sbjct: 697 PSPQQRSPSVTDLST--KDGTTVPESNN 722


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 405 SFALGMQFVIFRLFGYIPAPILFGNLIDSTCILWNNHAAARKADVACCTISSNSDT 572
           SFA  + F+I +LFG +   I+ G L  +  ++       R   V  C  S +S++
Sbjct: 169 SFATNLYFIIIQLFGSM--KIVKGTLKTAYYLISFALLIMRLISVCLCGASVHSES 222


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 15  NLTAACNLNCLCT 53
           N  A C  NC+CT
Sbjct: 557 NRPADCQQNCMCT 569


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +1

Query: 433 YSVCLDTYRPQYFSVISSTPRVFCGT 510
           Y+VCL    P  F +    PR+   T
Sbjct: 20  YTVCLVPLNPYQFFLAVQYPRIVVST 45


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,322
Number of Sequences: 336
Number of extensions: 2451
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)