Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1472
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    30   0.31 
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    27   2.9  
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    26   3.8  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   5.1  
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    25   6.7  
SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.8  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   8.8  

>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = -3

Query: 469 SIGAGMYPNKRNITNCIPRANERSSSLTDLSTIMRSGICVTATTNVMKK 323
           SIG G  P   N+ + IPR    SSS ++LS    S   +T T  +++K
Sbjct: 93  SIGMGFPPMSPNLQSSIPRLTNVSSS-SNLSMNTISSTALTPTEKILQK 140


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 597 IPPHKHTYLY 568
           IPPHKH YLY
Sbjct: 352 IPPHKHRYLY 361


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -3

Query: 502 RIHVESMRLPKSIGAGMYPNKRNITNCIPRANERSSSLTDLSTIM---RSGICVTATTNV 332
           R+  E++ L K    G+ P+K  +++   +AN  +     L  IM   R    V+  T +
Sbjct: 71  RLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRL 130

Query: 331 MKKSSTRKGKMVV 293
           +++   R G  V+
Sbjct: 131 IEQGHVRVGPHVI 143


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 340 TNVMKKSSTRKGKMVVQGGLQGPAVATG 257
           T  +K S TRKGK+ + G L   + + G
Sbjct: 475 TGALKSSFTRKGKLSIAGALNDLSKSVG 502


>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 478 LPKSIGAGMYPNKRNITNC-IPRANERSSSLTDLSTIMRSGICVTATTNVMKKSSTRKGK 302
           L   +G G   N + +    IP  +++   + D+S  +R  ICVT   N+      RKG+
Sbjct: 118 LSGELGQGNRSNSQGLREIDIPYLDDKEF-IIDISAGLRHWICVTNEGNLYGCGDGRKGQ 176

Query: 301 M 299
           +
Sbjct: 177 L 177


>SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 94

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 393 EEERSFALGMQFVIFRLFGYIPAPILFGNLI 485
           EEERS++   +   F L GYI   +LF  L+
Sbjct: 16  EEERSYS---RKAFFHLIGYITCSVLFSWLV 43


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = -3

Query: 604 DFYSSTQAYIPVSEL 560
           +FY+S +A++PVSE+
Sbjct: 597 EFYNSVRAFLPVSEM 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,471
Number of Sequences: 5004
Number of extensions: 38781
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)