Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1472
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0303 - 2171796-2172611,2173133-2174062,2174659-2175132,217...    33   0.24 
08_02_1268 - 25751744-25752637                                         29   3.0  
07_01_0446 - 3371829-3372132,3374691-3375673                           28   5.2  
11_06_0184 - 21006659-21009823                                         28   6.9  
05_03_0150 - 8953545-8954024                                           28   6.9  
01_06_1092 + 34469732-34470118                                         28   6.9  
09_03_0207 - 13486694-13487047                                         27   9.1  
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487...    27   9.1  

>07_01_0303 -
           2171796-2172611,2173133-2174062,2174659-2175132,
           2175569-2175609,2176298-2176337
          Length = 766

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 345 AVTQMPLLMIVLRSVSEEERSFALGMQFVIFRLFGYIPAPIL-FGNLIDSTCILWNN 512
           AV    LLM+VL SV E +R   LG+         +I A IL FG    S C LWN+
Sbjct: 475 AVVSNELLMLVLDSVEELKRKLVLGLD-------SHISARILHFGLANPSVCRLWNS 524


>08_02_1268 - 25751744-25752637
          Length = 297

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +3

Query: 408 FALGMQFVIFRLFGYIPAPILFGNLIDSTCILWNNHAAARKADVACCTISSNSDTGMYAC 587
           FAL    ++  + G++ AP      +    I W  HA A +      T+    DTG Y  
Sbjct: 8   FALAAALLLTIISGHLAAPATADGYVGGLAIYWGRHADADEG-----TLRQACDTGRYTT 62

Query: 588 V 590
           V
Sbjct: 63  V 63


>07_01_0446 - 3371829-3372132,3374691-3375673
          Length = 428

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 20  DGRVQFKLPVHGDGHGTGLREQRP 91
           DGRV++K  V+   HG G+R  RP
Sbjct: 48  DGRVEWKDVVYDAAHGLGVRMYRP 71


>11_06_0184 - 21006659-21009823
          Length = 1054

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 14  ESDGRVQFKLPVHGDGHGTGLREQRP 91
           +SDGR + +LP    G G G+++Q+P
Sbjct: 226 QSDGRNKEQLPPPQSGGGNGIKQQQP 251


>05_03_0150 - 8953545-8954024
          Length = 159

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 50 HGDGHGTGLREQRPHV 97
          HG G G GL+E+ PHV
Sbjct: 25 HGSGSGDGLQEEPPHV 40


>01_06_1092 + 34469732-34470118
          Length = 128

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +3

Query: 66  EPVCGNNGLTYFSPC-HAGCA 125
           +PVCG +G+TY+  C  A CA
Sbjct: 64  DPVCGADGVTYWCGCPEAACA 84


>09_03_0207 - 13486694-13487047
          Length = 117

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 464 WGRYVSKQTEYHKLHTESKRTFFF 393
           WGR+    +    LH + KR+FFF
Sbjct: 69  WGRFCCADSGSFLLHVDMKRSFFF 92


>03_01_0005 +
           46370-46454,46962-47071,47381-47545,47672-48463,
           48730-48840,48935-49195,49415-49638,49735-49855,
           50673-51214,51302-51488,51569-51895,52047-52197,
           52287-52424,52918-53013,53276-53357,54411-54679,
           54769-54882,55050-55288,55488-55715,55799-55951,
           56479-56616,57061-57188,57598-57718,58142-58306,
           59486-59633,59772-59898,60025-60118,60119-60268,
           60577-60624,60712-60819,61040-61114,61225-61275,
           61341-61487,61584-61714,61944-62031,62204-62266,
           62336-62582,62830-62981,63056-63126,63214-63370,
           63520-63687
          Length = 2323

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 497 TRGVDEITEKYWGRYVSKQTEYHKLHTESKRT 402
           ++G  ++    W +Y+  + E H LH ++K+T
Sbjct: 115 SKGSHQVMRAEWEKYLLGKAELHGLHRKNKKT 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,997,661
Number of Sequences: 37544
Number of extensions: 270999
Number of successful extensions: 803
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)