Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1472
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54930.1 68416.m06087 serine/threonine protein phosphatase 2A...    33   0.15 
At5g64500.1 68418.m08103 membrane protein-related contains weak ...    32   0.35 
At5g54040.1 68418.m06721 DC1 domain-containing protein contains ...    29   1.9  
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f...    29   1.9  
At5g04500.1 68418.m00449 glycosyltransferase family protein 47 l...    28   5.7  
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran...    27   7.6  
At1g03687.2 68414.m00348 DTW domain-containing protein contains ...    27   7.6  
At1g03687.1 68414.m00349 DTW domain-containing protein contains ...    27   7.6  

>At3g54930.1 68416.m06087 serine/threonine protein phosphatase 2A
           (PP2A) regulatory subunit B', putative similar to
           SWISS-PROT:Q28653 serine/threonine protein phosphatase
           2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
           subunit, B' delta isoform, PP2A, B subunit, B56 delta
           isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
           subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
           [Oryctolagus cuniculus]; contains Pfam domain, PF01603:
           Protein phosphatase 2A regulatory B subunit (B56 family)
          Length = 497

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 22/95 (23%), Positives = 40/95 (42%)
 Frame = -3

Query: 607 YDFYSSTQAYIPVSELLDIVQQATSXXXXXXXXFHRIHVESMRLPKSIGAGMYPNKRNIT 428
           Y F   T+  I + ELL+I+    +         HR+++    LP     G+    + + 
Sbjct: 264 YKFLYETERCIGIGELLEILGSVINGFTVPMREEHRLYLVKAILPLHKSKGISIYHQQLA 323

Query: 427 NCIPRANERSSSLTDLSTIMRSGICVTATTNVMKK 323
            C+ +  E+   L D  T++R  +     TN  K+
Sbjct: 324 YCVTQFVEKDYKLAD--TVIRGLLKFWPLTNCQKE 356


>At5g64500.1 68418.m08103 membrane protein-related contains weak
           similarity to spinster type IV (GI:12003976) [Drosophila
           melanogaster]
          Length = 484

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 351 TQMPLLMIVLRSVSEEERSFALGMQFVIFRLFGYIPAPILFGNLID 488
           TQ P+  IVL  V    R  A+ M  V   +FG +P+  L G L D
Sbjct: 382 TQGPVNFIVLHCVKPSLRPLAMAMSTVSIHIFGDVPSSPLVGVLQD 427


>At5g54040.1 68418.m06721 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 596

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 482 HRLHVYSVEQSCSGEKGGRCLLYDIEQFRYRYVCLCGGIKIVS 610
           H LH + +  S +G +  RC   DI+   + Y CL  G K +S
Sbjct: 350 HLLHKHKLTLSSTGNRFLRCKACDIKTNGFIYECLHEGCKSIS 392


>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 117

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 9   KVNLTAACNLNCLCTETDMEPVCGNNGLTYFSPC-HAGC 122
           +V     C +NC   +    PVCG +G+TY+  C  A C
Sbjct: 37  RVKDRGGCTINCFRAD----PVCGTDGVTYWCGCPDAAC 71


>At5g04500.1 68418.m00449 glycosyltransferase family protein 47 low
           similarity to Exostosin-like 2, Homo sapiens
           [SP|Q9UBQ6], EXTL2, Mus musculus [GI:10443633]
          Length = 765

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 443 VWIHTGP-NTFR*SHRLHVYSVEQSCSGEKGGRCLLYDIEQFRYRYVC 583
           +W  + P  T++   +  +Y+ ++S     GGR  LYD   +R    C
Sbjct: 271 IWYSSSPLGTWKPHKKNPIYNGKRSIGARNGGRAFLYDGSLYRVGQDC 318


>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
           methyltransferase family protein similar to
           N2,N2-dimethylguanosine tRNA methyltransferase [Homo
           sapiens] GI:11066198; contains Pfam profile PF02005:
           N2,N2-dimethylguanosine tRNA methyltransferase
          Length = 599

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 45  LCTETDMEPVCGNNGLTYFS 104
           +CT TDM  +CG NG   +S
Sbjct: 233 MCTATDMAVLCGGNGEVCYS 252


>At1g03687.2 68414.m00348 DTW domain-containing protein contains
           Pfam PF03942: DTW domain
          Length = 278

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 429 VIFRLFGYIPAPILFGNLIDSTCILWNNHAAARKADVACCTISSNSD 569
           +++++FG   A +    + +   I+WN    A K+ V C   + NS+
Sbjct: 156 LLWQIFGVQSATLCVFGIAEDEEIMWNEFKRAGKSQVRCLYPNHNSE 202


>At1g03687.1 68414.m00349 DTW domain-containing protein contains
           Pfam PF03942: DTW domain
          Length = 350

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 429 VIFRLFGYIPAPILFGNLIDSTCILWNNHAAARKADVACCTISSNSD 569
           +++++FG   A +    + +   I+WN    A K+ V C   + NS+
Sbjct: 156 LLWQIFGVQSATLCVFGIAEDEEIMWNEFKRAGKSQVRCLYPNHNSE 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,991,828
Number of Sequences: 28952
Number of extensions: 211781
Number of successful extensions: 596
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)