Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1470
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.69 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.8  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.8  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.8  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   8.5  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 294 GSGYLFCSVPHLLLRVLLSHTDHHALMAGPSHDRGEHGARSIISC 160
           GS Y+   VP    RVLL+ TD   +    S D  E+G     +C
Sbjct: 329 GSNYMQTRVPAWCDRVLLNPTDKMLVQDISSPDAVEYGIIGPTTC 373


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 286 IPLLLCASSPTKSPSVPYRPSRPDGGAFPRSRGTR 182
           +P+ + A+ PT      YR   PDG   P    T+
Sbjct: 265 LPVGVTAAIPTSENPADYRYFCPDGSKVPIDANTK 299


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 286 IPLLLCASSPTKSPSVPYRPSRPDGGAFPRSRGTR 182
           +P+ + A+ PT      YR   PDG   P    T+
Sbjct: 265 LPVGVTAAIPTSENPADYRYFCPDGSKVPIDANTK 299


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 286 IPLLLCASSPTKSPSVPYRPSRPDGGAFPRSRGTR 182
           +P+ + A+ PT      YR   PDG   P    T+
Sbjct: 265 LPVGVTAAIPTSENPADYRYFCPDGSKVPIDANTK 299


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +1

Query: 496 SPSKRALAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRP 648
           S ++ + ++  +++HR        C P   +L +I + P HP +  S S P
Sbjct: 55  SGTRSSESLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHPPAS-STSLP 104


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 375  LRVAPEEHPVLLTEAPLNPKANREKM 452
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 204 KAPPSGRDGRYGTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDD 338
           K  P G  G  G + +L   E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 204 KAPPSGRDGRYGTEGLLVGDEAQSKRGILTLKYPIEHGIVTNWDD 338
           K  P G  G  G + +L   E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 472 HSTRPPCTSPSKRALA 519
           H T PP  SPS +A A
Sbjct: 674 HLTSPPARSPSSQAQA 689


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 139 GMCKAGFAGD 168
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,737
Number of Sequences: 438
Number of extensions: 5447
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)