Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1468
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    27   2.2  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    27   3.9  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    26   6.8  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   6.8  

>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 512 IAIDTGNNKVSESLLEQRD--IIFYHDHFIEVPLSVAL*GIAVKCFFTVKKSLQQELARR 685
           ++++ G  K+ ESLL++    +I +       P        A K    ++K+ Q+E    
Sbjct: 140 LSLELGPEKLEESLLQRSTDALIDFERTHGRFPRVSGRGPYAAKMLELLEKTYQEEATIN 199

Query: 686 IGKPKQEITRLFD 724
            GK + EI+ L+D
Sbjct: 200 FGKVEGEISALYD 212


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 13  RAAGIRHFTNFYCH*SGQAYRR 78
           R A + HFTN++   SGQ Y++
Sbjct: 473 RFANLAHFTNYFVPLSGQLYQK 494


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 313 PPLKRRSIFCALPISTPWSRALSKSTAKIFMR 408
           P L+   I  +LPI+TP+S+  ++    I ++
Sbjct: 74  PDLRDTKIHTSLPITTPFSKKRAREAKNILLK 105


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +2

Query: 2   SGSPGLQEYGISQIFIAIEVDKLIDGPT--RDAKLQRIMDYVTTAERADENQAIRLPGHE 175
           +G  GL + G+S     +EV  +ID  T  +  ++  +  +    E   + + ++    +
Sbjct: 718 AGIGGLSDDGLSDSDAELEVQNMIDDETTIQKGEVASMAQFAKDQEMDRDEKLVKQLMKD 777

Query: 176 FTT-LLAENRRNGI-TVDDS 229
            TT  L +  RNG   +DDS
Sbjct: 778 VTTGALRKRNRNGFAALDDS 797


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,919
Number of Sequences: 5004
Number of extensions: 68314
Number of successful extensions: 169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)