Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1468
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0721 - 22517332-22517378,22517621-22518245                       29   3.1  
08_02_0913 + 22540078-22540166,22540280-22540420,22541151-225412...    29   4.1  
03_04_0172 + 18017164-18017313,18017389-18017499,18017719-180178...    29   4.1  
12_01_0843 + 7891622-7892524                                           28   7.1  
02_01_0105 - 775740-776624,777633-778268                               28   7.1  
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944...    28   7.1  
06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818     28   9.4  

>12_02_0721 - 22517332-22517378,22517621-22518245
          Length = 223

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 42  FLLPLKWTSLSTVPPAMPSCNVSWITLL-PLNA-LTKTRPSA 161
           FLLP+    +   PP+ P C   W T L P  A + + RP A
Sbjct: 114 FLLPVAAAVVVATPPSSPQCRQRWRTALRPAGAHVGRVRPQA 155


>08_02_0913 +
           22540078-22540166,22540280-22540420,22541151-22541281,
           22542278-22542460,22542555-22543195
          Length = 394

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = +3

Query: 216 PLMTACGPKSRRYRR*VMIFGHIAQPNPCRLPAA-IEKALDFLRATDFNALEPGVVEIDG 392
           P+ +   P S R+R  +    +   P P RL A+ I + ++  R    NA+E G   I+ 
Sbjct: 129 PISSTDKPISARWRILMPDGSYGKYPKPRRLAASEIPEIVEQYRQAAINAIEAGFDGIEI 188

Query: 393 KNIYAQIIDLTTREAVENRPE 455
              +  IID   ++ + +R +
Sbjct: 189 HGAHGYIIDQFLKDGINDRTD 209


>03_04_0172 +
           18017164-18017313,18017389-18017499,18017719-18017886,
           18017985-18018098,18019070-18019126,18019797-18020475,
           18021016-18021174,18021449-18021618
          Length = 535

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 59  VDKLIDGPTRDAKLQRIMDYVTTAERADENQAIRLPGHEFTTLLAEN 199
           ++  IDG      ++ +  +  T  R D+ +AI +P H+FT  +  N
Sbjct: 73  INTKIDGVEVSGIVEHVGWWSPTIIRGDDREAIYIPNHKFTVSILRN 119


>12_01_0843 + 7891622-7892524
          Length = 300

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 63  TSLSTVPPAMPSCNVSWITLLPLNALTKTRPSAYPA 170
           TS+ + PP  PS  +  + + PL+  T T P   PA
Sbjct: 109 TSVESSPPPPPSAMLPLLPVRPLDTTTTTPPPVAPA 144


>02_01_0105 - 775740-776624,777633-778268
          Length = 506

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 371 RLQGVEIGSAQK--IERLFNGGGQTARIGLRDMSKNHDLSPI 252
           R++ V +G  ++  +ERLF  GG    +GL D   +HD   I
Sbjct: 170 RIKAVLVGEKKREVVERLF-AGGDMPDVGLGDRESDHDFMAI 210


>01_05_0687 +
           24288648-24292746,24293737-24293844,24294333-24294442,
           24295208-24295282
          Length = 1463

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 63  TSLSTVPPAMPSCNVSWITLLPLNALTKTRPS--AYPATNLLPCWPKTAVTVLP 218
           +S    P    +C VSW+ L P   L ++ PS     A  +L   P+ AV  +P
Sbjct: 768 SSPEMAPAGSENCKVSWLPLPPPTPLGESMPSLPVAAAPKVLLVMPEEAVESVP 821


>06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818
          Length = 375

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 183 PCWPKTAVTVLPLMTACGPKSRRYRR*VMIFGHIAQPNPCRLPAA 317
           PC PK+      L  ACG + R+ RR +M  G  A PN     AA
Sbjct: 203 PCGPKS------LCNACGIRQRKARRAMMASGLPASPNAAGPKAA 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,600,292
Number of Sequences: 37544
Number of extensions: 497335
Number of successful extensions: 1416
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)