Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1468
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)          31   0.77 
SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)                  31   1.0  
SB_26424| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_43960| Best HMM Match : Toxin_19 (HMM E-Value=0.56)                 30   1.8  
SB_17448| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                 30   1.8  
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)                         29   3.1  
SB_13520| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_37222| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_33332| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_56708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_31130| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_34785| Best HMM Match : NAC (HMM E-Value=9.9)                       28   9.5  
SB_38562| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_37193| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
          Length = 508

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = +1

Query: 106 YHGLRYYR*TR*RKPGHPLTRPRIYYPAGRKPP*RYY 216
           Y+  RYY   R   P    TR R YYP    PP RYY
Sbjct: 462 YYPYRYYYPYRYYPPIDTTTRYRYYYPYRYYPPYRYY 498


>SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)
          Length = 808

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = +3

Query: 81  PPAMPSCNV--SWITLLPLNALTKTRPSAYPATNLLPCWPKTAVTVLP 218
           P A+P+ N+  S  T LP + + +++P+A PA+N++   P    TVLP
Sbjct: 328 PTALPASNMVQSKPTALPASNMVQSKPTALPASNMVQSKP----TVLP 371



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +3

Query: 81  PPAMPSCNV--SWITLLPLNALTKTRPSAYPATNLLPCWPK 197
           P A+P+ N+  S  T+LP + +  ++P+  PA+N++   PK
Sbjct: 354 PTALPASNMVQSKPTVLPASNMVHSKPTVLPASNMVHSKPK 394



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +3

Query: 93  PSCNVSWITLLPLNALTKTRPSAYPATNLLPCWP 194
           P  ++S  T+LP + + +++P+A PA+N++   P
Sbjct: 308 PRSHLSKPTVLPASNMVQSKPTALPASNMVQSKP 341



 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +3

Query: 81  PPAMPSCNV--SWITLLPLNALTKTRPSAYPATNLLPCWP 194
           P  +P+ N+  S  T LP + + +++P+A PA+N++   P
Sbjct: 315 PTVLPASNMVQSKPTALPASNMVQSKPTALPASNMVQSKP 354


>SB_26424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -1

Query: 419 IDNLRINIFAVDFDNARLQGVEIGSAQKIERLFNGG 312
           +DN R N++   F   R Q V IGSA  + R  NGG
Sbjct: 360 MDNKR-NVWIAAFLQGRSQSVRIGSASSVVRYLNGG 394


>SB_43960| Best HMM Match : Toxin_19 (HMM E-Value=0.56)
          Length = 166

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -3

Query: 126 VVT*SMIRCSLASRVGP--SISLSTSMAIKICEMPY-SCSPGDPL 1
           +++ +++RC   S+ GP    +    + +K   +P  SCSPGDPL
Sbjct: 8   LISANIVRCQSRSQCGPHQDCNKMLGLCLKQANVPSNSCSPGDPL 52


>SB_17448| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 890

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 380 DNARLQGVEIGSAQKIERLFNGG 312
           DN R Q V IGSA  + R  NGG
Sbjct: 623 DNGRSQSVRIGSASSVVRYLNGG 645


>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
          Length = 893

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 625 TLEGDAQRYFNKVIMIKNNIALL 557
           T EG+AQRYF+  + ++N I  L
Sbjct: 356 TAEGEAQRYFDHAVTLRNTILFL 378


>SB_13520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 90  SRVGPSISLSTSMAIKIC-EMPYSCSPGDPL 1
           S  GP   L   +  +IC E   SCSPGDPL
Sbjct: 11  SSQGPRQRLRVRLRYRICRERSNSCSPGDPL 41


>SB_37222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 160

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 87  RVGPSISLSTSMAI-KICEMPYSCSPGDPL 1
           R G S+ +S    + K+CE   SCSPGDPL
Sbjct: 18  RQGKSVLVSVPQGLRKLCESN-SCSPGDPL 46


>SB_33332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 334 IFCALPISTPWSRALSKSTAKIFMRKL 414
           ++   P  TP +RA S++TAK+F+R L
Sbjct: 120 MYAIRPPKTPNNRAFSRTTAKMFVRSL 146


>SB_56708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +3

Query: 3  VDPPGCRNTAFH---KFLLPLKWTSLST 77
          VDPPGCRN+ F+   KF L   W  L T
Sbjct: 16 VDPPGCRNSMFYGDNKFAL---WIDLRT 40


>SB_31130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -3

Query: 48 IKICEMPYSCSPGDPL 1
          I  CE   SCSPGDPL
Sbjct: 3  ISTCEASNSCSPGDPL 18


>SB_34785| Best HMM Match : NAC (HMM E-Value=9.9)
          Length = 131

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -1

Query: 509 HFLFTPRQKLNIDIPTMHFRTVFHRFACG*IDNLRINIFAVDFDNARL-QGVEIGSAQKI 333
           HF  +PR +  I   +  FR+ F RF    +D+ RI   A   +N  +  G++  + Q I
Sbjct: 53  HFRPSPRHRRGIVFKSFRFRSSFSRFR---VDDTRIRKVAFSNENEYVGTGMKFSNCQYI 109

Query: 332 ERLFN 318
              F+
Sbjct: 110 SSNFH 114


>SB_38562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 3  VDPPGCRNTAFHKF 44
          VDPPGCRN+  ++F
Sbjct: 16 VDPPGCRNSIINRF 29


>SB_37193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 534 LFPVSIAMPFSLHPTPETEYRYT--DDALPDGFPPLRVWLNR*FAHKY 397
           LFP S+  P ++       +RY      +P  FPP  V  +R F H+Y
Sbjct: 170 LFPPSVQDPITISSISARSHRYFLHQCEIPSLFPPSVVRSHRYFLHQY 217


>SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 72 ISLSTSMAIKICEMPYSCSPGDPL 1
          + +S    I IC +  SCSPGDPL
Sbjct: 21 VVVSAINIICICTVSNSCSPGDPL 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,362,014
Number of Sequences: 59808
Number of extensions: 552695
Number of successful extensions: 3299
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3297
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)