Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1468
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83218-3|CAB05688.1|  330|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U28732-7|AAB04899.1|  114|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81142-3|CAB03505.1|  491|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>Z83218-3|CAB05688.1|  330|Caenorhabditis elegans Hypothetical
           protein C31A11.6 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +3

Query: 15  GCRNTAFHKFLLPLKWTSLSTVPPAMPSCNVSWI--TLLPLNALTKTRPSAYPATNLLPC 188
           G R   F+ FL+ +   +L  +P  +  C V+++  TL+ L A    R      TN+   
Sbjct: 124 GQRRIFFYSFLILILCFTLLLIP-RLSYCPVNFLASTLVFLTACAPERHPVTKFTNINAI 182

Query: 189 WPKTAVTVLPLMTACGPKSRRY 254
           W  T + V+ ++     K+ RY
Sbjct: 183 WVPTTLLVINVLMMLHLKAHRY 204


>U28732-7|AAB04899.1|  114|Caenorhabditis elegans Hypothetical
           protein F45E1.2 protein.
          Length = 114

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 225 TACGPKSRRYRR*VMIFGHIAQPNPCRLP 311
           +A  P+S+  +  +  FGH++ P+P RLP
Sbjct: 56  SARSPRSKASQGYLSYFGHLSNPSPARLP 84


>Z81142-3|CAB03505.1|  491|Caenorhabditis elegans Hypothetical
           protein ZK1037.6 protein.
          Length = 491

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = +3

Query: 387 DGKNIYAQIIDLTTREAVENRPEVHRRYIDIQFLAWGEEKMALLLIREIIKSANHY*SSA 566
           DGK+IY+ I   +    +    E++   + I+F          LL   I K+A    S  
Sbjct: 420 DGKSIYSLIFSSSNLPTLNLVSEIYGDAVHIEFSTHDSYSEGCLLNFAITKAATG--SFT 477

Query: 567 ILFFIMITL 593
           IL F +ITL
Sbjct: 478 ILIFTLITL 486


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,511,240
Number of Sequences: 27780
Number of extensions: 399769
Number of successful extensions: 909
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)