Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1468
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.5  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 132 NALTKTRPSAYPATNLLPCWPKTAVTVLPLMTAC 233
           + L +T P  Y  T +   WPK  VT +  +  C
Sbjct: 203 DVLVETEPIYYNLTMVKLNWPKKRVTKMSSINPC 236


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 132 NALTKTRPSAYPATNLLPCWPKTAVTVLPLMTACGPKSRR 251
           +A +   PSA P+   L     T  T L +++    KSRR
Sbjct: 691 HASSPLEPSAVPSKFCLSVTLLTVATSLVIVSRYAEKSRR 730


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 558 SNSDSLTLLFPVSI 517
           SNSDSL++  P SI
Sbjct: 48  SNSDSLSMTIPPSI 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,456
Number of Sequences: 438
Number of extensions: 4887
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)