Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1468
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc...    34   0.090
At1g01690.1 68414.m00087 expressed protein                             30   1.9  
At4g10360.1 68417.m01701 expressed protein                             28   5.9  

>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein weak similarity to
           CARS-Cyp [Homo sapiens]  GI:1117968; contains Pfam
           profile PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 837

 Score = 34.3 bits (75), Expect = 0.090
 Identities = 29/69 (42%), Positives = 38/69 (55%)
 Frame = +1

Query: 190 GRKPP*RYYR**QRVGQNPGVIGDKS*FLDISRSPIRAVCPPPLKRRSIFCALPISTPWS 369
           GR PP RY R  + V  +PG+      +   SRSPIR+  PP  KRRS   +  +S   S
Sbjct: 732 GRTPP-RYRRRSRSV--SPGLCYRNRRY---SRSPIRSRSPPYRKRRSPSASHSLSPSRS 785

Query: 370 RALSKSTAK 396
           R+ SKS +K
Sbjct: 786 RSRSKSYSK 794


>At1g01690.1 68414.m00087 expressed protein
          Length = 742

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +3

Query: 381 EIDGKNIYAQIIDLTTREAVENRPEVHRRYIDIQFLAWGEEKMALLLIREIIKSANHY*S 560
           E D  N YA + D          P +H   +   FL WG   +A+ L++     ++ + +
Sbjct: 640 ETDDDNPYAMLPDFPRNPPP---PALHHHSMSAWFL-WGVRSVAVYLLKTHSGESDLFAT 695

Query: 561 SAILFF--IMITLLK 599
            A+LFF    ITLLK
Sbjct: 696 GALLFFHAYCITLLK 710


>At4g10360.1 68417.m01701 expressed protein
          Length = 266

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
 Frame = +3

Query: 33  FH--KFLLPLKWTSLSTVPPAMPSCNVSW---ITLLPLNALTKTRPS 158
           FH  K + PL + SL T+PPA+   N+ W   IT   +  L+K + S
Sbjct: 215 FHQVKQVFPLGFYSLLTIPPALAVMNLLWFWKITKGLIKTLSKAKTS 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,432,557
Number of Sequences: 28952
Number of extensions: 371296
Number of successful extensions: 989
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)