Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1466
         (652 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   5.0  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   8.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.8  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 225 EESTRPEGPGSKAAQNLSILLGGSLKHM 308
           ++ T P GP      +LS  LGG L  M
Sbjct: 67  KQQTAPHGPPYAPHPSLSSGLGGGLSGM 94


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 144 PERLIAEVLKQTGRQEDRRCCG*GSHSE 227
           PE  + + L Q+ R+++   CG G+  +
Sbjct: 27  PEEKLLDALCQSFRKQNSSSCGNGNRCD 54


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 580 ARHYVRLDLGYD 545
           ARHYV+ D G D
Sbjct: 829 ARHYVQYDQGED 840



 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 308  HVLERAAEQDRQV 270
            H LERAA++ RQ+
Sbjct: 1419 HNLERAAQKKRQI 1431


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 580 ARHYVRLDLGYD 545
           ARHYV+ D G D
Sbjct: 829 ARHYVQYDQGED 840



 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 308  HVLERAAEQDRQV 270
            H LERAA++ RQ+
Sbjct: 1419 HNLERAAQKKRQI 1431


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 580 ARHYVRLDLGYD 545
           ARHYV+ D G D
Sbjct: 829 ARHYVQYDQGED 840



 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 308  HVLERAAEQDRQV 270
            H LERAA++ RQ+
Sbjct: 1419 HNLERAAQKKRQI 1431


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 580 ARHYVRLDLGYD 545
           ARHYV+ D G D
Sbjct: 829 ARHYVQYDQGED 840



 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 308  HVLERAAEQDRQV 270
            H LERAA++ RQ+
Sbjct: 1419 HNLERAAQKKRQI 1431


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,015
Number of Sequences: 336
Number of extensions: 2470
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)