Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1466
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    28   1.3  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    27   3.1  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    27   3.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.4  
SPAC1782.03 |||microfibrillar-associated protein family protein|...    25   7.2  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   7.2  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   7.2  
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    25   9.5  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    25   9.5  

>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 503 AQLRSLAFREHYAEIISEIKPDIV 574
           A LR LA +  +AE + ++KPD++
Sbjct: 721 ADLRDLANQAMFAEFVEKVKPDVI 744


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -1

Query: 310 DMCLSEPPSRIDRFWAALLPGPSGRVLSSECEPYPQHLRSSWRPVCLRTSAIS 152
           DM    P  +ID   + LL       LS EC    QH+      +C+ +S IS
Sbjct: 406 DMRTWNPDYKIDILVSELLGSMGDNELSPECLDGVQHVLDEETGICIPSSYIS 458


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +1

Query: 61  WKTITPQKMSEKAFWVNVQEDRLASPDILSGLSQKFSSKPVAKKTEDAVDKAHTLKKVRD 240
           W  ++P  +  K  W+    DR    D L G +Q   S   A + EDA D  HT   +  
Sbjct: 229 WWDLSPLAIIGKLDWI----DRNQLIDFLLG-TQDADSGGFADRKEDATDVYHTCFSLAG 283

Query: 241 LKVLE 255
           L +L+
Sbjct: 284 LSLLQ 288


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 385  MSRSSTFPVSTVVSQRSTHVRMC 317
            +S    FPVS  VS+  THVR C
Sbjct: 1592 ISTIQRFPVSEWVSKLDTHVRNC 1614


>SPAC1782.03 |||microfibrillar-associated protein family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 154 LSQKFSSKPVAKKTEDAVDKAHTLKKVRDLKVLE 255
           L  KF+SK +  + +   +    LKKV   K+LE
Sbjct: 127 LPPKFTSKVIKNRAKANEEDTEVLKKVTSQKILE 160


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/55 (21%), Positives = 31/55 (56%)
 Frame = +1

Query: 91  EKAFWVNVQEDRLASPDILSGLSQKFSSKPVAKKTEDAVDKAHTLKKVRDLKVLE 255
           E+A+ +N+   R+ SP+ L  ++++     V++ +E A  +    ++ ++ K L+
Sbjct: 672 EEAYAINIGGGRVISPEELEEIARRNVDPMVSELSERAAQERERKEQAKEAKRLK 726


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
            factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = +1

Query: 1    PHGLKPKKKWEVEGPLKRANWKTITPQKMSEKAFWVNVQEDRLASPDILSGLSQKFSSKP 180
            PH L P   + ++G  +  +    TP+ +S K +  NV+++ +         S+    KP
Sbjct: 946  PHLLDPDNNFNLKGNPENPSSTFFTPEILSPKVYSDNVKDEPVEDIFGFEDTSESSPGKP 1005


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 252 QDLQVAYFLQSVSLIHSIFGLLGDRF 175
           QDL + YF+Q  S + S+ G+L  RF
Sbjct: 262 QDL-IGYFIQKHSQVASMVGILPQRF 286


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 551 SEIKPDIVSGTAACEE 598
           SE++P++  GT  CEE
Sbjct: 220 SEVRPELAQGTFICEE 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,296,369
Number of Sequences: 5004
Number of extensions: 39878
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)