Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1466
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1056 - 33804717-33804871,33805352-33805418,33805508-338055... 41 7e-04
08_01_1069 + 10916376-10916448,10917331-10918031,10918222-109184... 36 0.021
04_04_0137 - 23053148-23053798,23053911-23054146,23054268-230544... 32 0.34
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 0.60
08_02_0758 + 20848078-20849579,20849660-20849850,20849944-208501... 31 1.1
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 29 3.2
08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470 29 3.2
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 29 4.2
01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398 29 4.2
12_02_0611 + 21118777-21119066,21119501-21119594,21119742-211201... 28 7.4
11_06_0695 - 26340161-26340804,26342057-26343429,26344074-263441... 28 7.4
10_07_0053 - 12406958-12407011,12407012-12407168,12407280-124074... 27 9.8
02_01_0119 - 876317-876610,876937-877099,877222-877302,877508-87... 27 9.8
01_07_0262 + 42378465-42378634,42379100-42379230,42379307-423794... 27 9.8
>02_05_1056 -
33804717-33804871,33805352-33805418,33805508-33805576,
33806414-33806548,33806609-33806680,33807281-33807375,
33807778-33807859,33807949-33807999,33808107-33808187,
33808534-33808575,33808705-33808803,33809044-33809115,
33809166-33809270
Length = 374
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/79 (30%), Positives = 43/79 (54%)
Frame = +3
Query: 264 AQNLSILLGGSLKHMSYSHIRTCVLRCDTTVLTGNVLDLLIQYLPPADQMKKLAELKGNS 443
++N I+L ++K M + VL D +++ G+ +D LI++ P ++M+ L GN
Sbjct: 41 SKNCEIMLR-NIK-MPLPDLMNSVLALDDSIVDGDQVDYLIKFCPTKEEMELLKGFTGNK 98
Query: 444 EELTEAEQFAATVADVKRL 500
E L + EQF + V R+
Sbjct: 99 ENLGKCEQFFLEMMKVPRV 117
>08_01_1069 +
10916376-10916448,10917331-10918031,10918222-10918443,
10918526-10919351,10919437-10919574,10920431-10920569,
10920655-10920781,10921895-10921936,10922089-10922160,
10922491-10922589,10922694-10922735,10922947-10923027,
10923129-10923179,10923265-10923346,10923741-10923835,
10924739-10924810,10924907-10925023,10925176-10925244,
10925507-10925573,10925709-10925950
Length = 1118
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/81 (25%), Positives = 41/81 (50%)
Frame = +3
Query: 258 KAAQNLSILLGGSLKHMSYSHIRTCVLRCDTTVLTGNVLDLLIQYLPPADQMKKLAELKG 437
+ A N I+L + M + + +L D T+L + ++ LI++ P ++ + L KG
Sbjct: 760 RRANNCGIML--TKVKMPLPDLMSAILTLDDTILDADQVENLIKFTPTKEEAELLKGYKG 817
Query: 438 NSEELTEAEQFAATVADVKRL 500
+ + L E EQF + + R+
Sbjct: 818 DKQVLGECEQFFMELMKLPRV 838
>04_04_0137 -
23053148-23053798,23053911-23054146,23054268-23054458,
23054587-23056010
Length = 833
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 503 AQLRSLAFREHYAEIISEIKPDIVSGTAACEEVKSSRKFAKILGALV 643
A++ ++ +RE +A+ + I+ AC E+ SS+ F K+L A++
Sbjct: 591 ARVEAMLYRETFADEVGHIRKSFEMLEEACRELMSSKLFLKLLEAVL 637
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/49 (24%), Positives = 30/49 (61%)
Frame = +2
Query: 503 AQLRSLAFREHYAEIISEIKPDIVSGTAACEEVKSSRKFAKILGALVLL 649
++ R AF+ + I +++ ++++ ++ACEE++ S K I+ ++ L
Sbjct: 1410 SKFRIFAFKIQFQSQIRDVRKNLLTVSSACEELRGSEKLKVIMEKILFL 1458
>08_02_0758 +
20848078-20849579,20849660-20849850,20849944-20850179,
20850254-20850973
Length = 882
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = +2
Query: 506 QLRSLAFREHYAEIISEIKPDIVSGTAACEEVKSSRKFAKILGALV 643
++ + ++E++ + ++ IK AC E+KSS+ F ++L A++
Sbjct: 618 RMEVMLYKENFDDEVAHIKMSFAMIEGACTELKSSKLFLRLLEAVL 663
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +2
Query: 506 QLRSLAFREHYAEIISEIKPDIVSGTAACEEVKSSRKFAKILGALV 643
++ ++ + ++ + +K + AACEE++ SR F KIL A++
Sbjct: 501 RVEAMLYIANFDSEVDYLKTSFKTLEAACEELRGSRLFHKILDAVL 546
>08_01_0603 + 5308333-5308659,5309688-5309813,5309896-5311470
Length = 675
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 31 EVEGPLKRANWKTITPQKMSEKAFWVNVQEDRLASPDILSGLSQK--FSSKPVAKKTEDA 204
E++G N + K+ +K W + + D LSG K F+ + +KK E A
Sbjct: 508 EMQGSSSSRNGSEPSVNKICDKISWTSGDDSEAGQNDNLSGELSKAYFADRKPSKKKESA 567
Query: 205 VDK 213
+ K
Sbjct: 568 ISK 570
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/32 (34%), Positives = 23/32 (71%)
Frame = +2
Query: 548 ISEIKPDIVSGTAACEEVKSSRKFAKILGALV 643
+++++ + AAC+E+K+SR F K+L A++
Sbjct: 566 VNQLRMSYATLEAACQELKNSRLFHKVLEAVL 597
>01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398
Length = 240
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 250 GPSGRVLSSECEPYPQHLRSSWR-PVCLRTSAISRSG 143
GP GR + C P H RS WR PV + ++ R G
Sbjct: 108 GPDGR-RARRCPGGPVHARSRWRPPVSCKLASAERQG 143
>12_02_0611 +
21118777-21119066,21119501-21119594,21119742-21120182,
21120267-21120866
Length = 474
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 12 QAEKEMGGRGSVEAGQLEDDNA 77
+AE + G GSVE G +DDNA
Sbjct: 276 EAEVDHDGTGSVEGGDEDDDNA 297
>11_06_0695 -
26340161-26340804,26342057-26343429,26344074-26344173,
26345230-26345362,26346857-26347258
Length = 883
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 374 QHVPGEHGGVAAQHACAYVR 315
Q PGE VAA++A AYVR
Sbjct: 263 QETPGEDPAVAARYAAAYVR 282
>10_07_0053 -
12406958-12407011,12407012-12407168,12407280-12407410,
12407592-12407727,12407953-12408224,12408604-12408893,
12408984-12409285,12409359-12409424,12409506-12409571,
12409855-12409926,12410013-12410084,12410207-12410281,
12410367-12410438,12410531-12410663,12411556-12411655
Length = 665
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 166 FSSKPVAKKTEDAVDKAHTLKKVRDLKV 249
FS+KPVAKK+ A KA T+ V DL++
Sbjct: 362 FSNKPVAKKSNSASVKA-TVYSVADLQM 388
>02_01_0119 -
876317-876610,876937-877099,877222-877302,877508-877570,
878246-878355
Length = 236
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 402 ADQMKKLAELKGNSEELTEA-EQFAATVADVK 494
+D + LAEL+G +E+L E+ E+ T+ D+K
Sbjct: 108 SDAARLLAELRGEAEKLKESNEKLRETIKDLK 139
>01_07_0262 +
42378465-42378634,42379100-42379230,42379307-42379466,
42379547-42379850,42379936-42380037,42380583-42380606
Length = 296
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/40 (47%), Positives = 22/40 (55%)
Frame = +3
Query: 33 GRGSVEAGQLEDDNAAEDV*KSILGQRAGRQIGIPRHPER 152
G S EA QLED NA + KSI A +IG+P ER
Sbjct: 101 GAMSKEAAQLEDINAIGRMLKSI---SALAKIGVPHQAER 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,142,167
Number of Sequences: 37544
Number of extensions: 340452
Number of successful extensions: 1182
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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