Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1466
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   2e-10
SB_43471| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.012
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.038
SB_37556| Best HMM Match : FH2 (HMM E-Value=6.1)                       32   0.47 
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27)                   28   5.7  
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_29892| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_9641| Best HMM Match : MAT1 (HMM E-Value=0.47)                      28   7.6  

>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 33/72 (45%), Positives = 50/72 (69%)
 Frame = +3

Query: 258 KAAQNLSILLGGSLKHMSYSHIRTCVLRCDTTVLTGNVLDLLIQYLPPADQMKKLAELKG 437
           K+AQNLSI LG SLK  S+  I++ +L CD   L+ + ++ L++YLP  +QM++L+ +K 
Sbjct: 497 KSAQNLSIFLG-SLKS-SHEEIKSHILHCDQEKLSESAIESLLKYLPSPEQMEQLSNMKD 554

Query: 438 NSEELTEAEQFA 473
              EL+E EQFA
Sbjct: 555 QISELSEPEQFA 566


>SB_43471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +2

Query: 548 ISEIKPDIVSGTAACEEVKSSRKFAKIL 631
           +S+ K  +V+ TAAC EVK+S KFAK+L
Sbjct: 134 VSDEKKGVVNATAACREVKTSPKFAKLL 161


>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2149

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = +3

Query: 225  EESTRPEGP---GSKAAQNLSILLGGSLKHMSYSHIRTCVLRCDTTVLTGNVLDLLIQYL 395
            +E  +PE P   G K A N+SILLG   K  S   I+  +++ D + L    L  L+ Y 
Sbjct: 997  KEPKKPEKPQVLGPKKAYNISILLGHLKK--SAEEIKEAIMQMDDSKLNEAHLRQLLMYA 1054

Query: 396  PPADQMKKLAELKGNSEELTEAEQFAATVADV 491
            P + ++ K      +  ++  A+ F+  ++ V
Sbjct: 1055 PDSTELLKYKYFADDVSKMDIADIFSFEMSKV 1086



 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/48 (31%), Positives = 30/48 (62%)
 Frame = +2

Query: 506  QLRSLAFREHYAEIISEIKPDIVSGTAACEEVKSSRKFAKILGALVLL 649
            +L+++ FR  + +   E+KPD+ +   A  E+++S K  ++L  LVL+
Sbjct: 1092 RLKAMLFRAQFDDKCDEVKPDLEAVIDAAAELRTSDKLQRVL-ELVLM 1138


>SB_37556| Best HMM Match : FH2 (HMM E-Value=6.1)
          Length = 102

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 12/46 (26%), Positives = 29/46 (63%)
 Frame = +2

Query: 506 QLRSLAFREHYAEIISEIKPDIVSGTAACEEVKSSRKFAKILGALV 643
           +L++L F++ + E + ++KP + +   AC+EV  S++   +L  ++
Sbjct: 8   RLKALFFKKKFPERMGDLKPKVQAVIMACKEVTRSKRIRTLLEVIL 53


>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 24   EMGGRGSVEAGQLEDDNAAEDV*KSILGQ-RAGRQIGIPRHPERLIAEVLKQTGRQEDRR 200
            ++GGR  +E G + D        +  +G+ R  R+ G  R  E ++ E  ++  R+ DRR
Sbjct: 991  DVGGRSRMEGGYVSDGGYRRRDEEDTIGRVRGRRERGESRSREEIMREEEERERREADRR 1050


>SB_41548| Best HMM Match : ResIII (HMM E-Value=0.27)
          Length = 514

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 13  KPKKKWEVEGPLKRANWKTITPQKMSEKAFWVNV 114
           KP  KWE    L   N   ++P +  E A W  V
Sbjct: 219 KPVTKWEASPQLMFGNLLCLSPNRTFEDAIWATV 252


>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2578

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 13  KPKKKWEVEGPLKRANWKTITPQKMSEKAFWVNV 114
           KP  KWE    L   N   ++P +  E A W  V
Sbjct: 362 KPVTKWEASPQLMFGNLLCLSPNRTFEDAIWATV 395


>SB_29892| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 243

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 406 SAGGRYCMSRSSTF-PVSTVVSQRSTHVRMCEYD 308
           + GG    S SS F PVS ++   S H R   YD
Sbjct: 159 AVGGALAFSTSSNFKPVSQIIKDMSAHDRQLLYD 192


>SB_9641| Best HMM Match : MAT1 (HMM E-Value=0.47)
          Length = 642

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 402 ADQMKKLAELKGNSEELTEAEQFAATVAD 488
           ADQ+ + AE +GN   LT+A  F  T  D
Sbjct: 433 ADQLLQKAEDEGNLRHLTQANSFRRTAKD 461


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,462,612
Number of Sequences: 59808
Number of extensions: 346741
Number of successful extensions: 1231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)