Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1466
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   1.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.9  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 262 ALLPGPSGRVLSSECEPYPQHLRSSWRPVCLRT 164
           +L  GP+G+VL+    P P+ L     P+ + T
Sbjct: 15  SLTLGPAGQVLAGSSSPRPKPLLKKEYPLVMDT 47


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 164  SSQANRSPRRPKMLWIRLTL*RKYAT*R--SWKQGGPEPVDPARRLAQAHVV 313
            SS ++   RRP    I  ++   Y+T    +W+Q  P P  P     QA++V
Sbjct: 1319 SSGSSEDHRRPLSEHIYSSIDSDYSTLERTAWRQQQPPPPPPPPSSGQAYLV 1370


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -1

Query: 289 PSRIDRFWAALLPGPSGRVLSSECEPYPQHLRSSWRPVCLRTSAISRSGCR 137
           P ++   W ++L   +  + +    PY   + +SW P  +R  AI +  CR
Sbjct: 442 PIKLFEQWKSILESGTTTLQTRTMHPYDHLVWNSWMP-SIR-GAIQQWTCR 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,110
Number of Sequences: 438
Number of extensions: 2952
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)