Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1466
(652 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07650.1 68418.m00876 formin homology 2 domain-containing pro... 37 0.013
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 35 0.041
At3g32400.1 68416.m04142 formin homology 2 domain-containing pro... 35 0.041
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 35 0.054
At5g02410.1 68418.m00164 DIE2/ALG10 family contains Pfam PF04922... 34 0.071
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 31 0.88
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro... 30 1.2
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro... 30 1.5
At5g07780.1 68418.m00890 formin homology 2 domain-containing pro... 29 2.7
At4g24390.2 68417.m03498 F-box family protein (FBX14) similar to... 28 4.7
At4g24390.1 68417.m03497 F-box family protein (FBX14) similar to... 28 4.7
At3g49150.1 68416.m05372 F-box family protein contains F-box dom... 28 4.7
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica... 27 8.2
>At5g07650.1 68418.m00876 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 815
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +2
Query: 503 AQLRSLAFREHYAEIISEIKPDIVSGTAACEEVKSSRKFAKIL 631
A+LR +F+ + I+E+K + T+ACEEV+SS K +I+
Sbjct: 210 AKLRVFSFKTQFGTKITELKERLNVVTSACEEVRSSEKLKEIM 252
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/49 (26%), Positives = 31/49 (63%)
Frame = +2
Query: 503 AQLRSLAFREHYAEIISEIKPDIVSGTAACEEVKSSRKFAKILGALVLL 649
++LR+ +F+ + I+E+ + + +ACEEV++S K +I+ ++ +
Sbjct: 577 SKLRAFSFKIQFGTQIAELNKGLNAVNSACEEVRTSEKLKEIMANILCM 625
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 35.1 bits (77), Expect = 0.041
Identities = 14/49 (28%), Positives = 31/49 (63%)
Frame = +2
Query: 503 AQLRSLAFREHYAEIISEIKPDIVSGTAACEEVKSSRKFAKILGALVLL 649
++LR +F+ H+ I E+ + + +ACEE+++S+K +I+ ++ L
Sbjct: 607 SKLRVFSFKIHFGTQIKELNKGLNTVNSACEEIRTSQKLKEIMKIILCL 655
Score = 30.7 bits (66), Expect = 0.88
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3
Query: 306 MSYSHIRTCVLRCDTTVLTGNVLDLLIQYLPPADQMKKLAELKGNSEELTEAEQF 470
M + VL D +VL + ++ LI++ P ++MK L G+ L + EQ+
Sbjct: 541 MPLPDMMAAVLGMDESVLDVDQIENLIRFCPTKEEMKLLKNYTGDKATLGKCEQY 595
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 503 AQLRSLAFREHYAEIISEIKPDIVSGTAACEEVKSSRKFAKILGALVLL 649
++LR F+ ++ I++ K + +ACEEV SS+K +I+ + L
Sbjct: 281 SKLRVFYFKIQFSTKITQFKKRLNVVNSACEEVCSSQKLKEIMKKITCL 329
>At3g32400.1 68416.m04142 formin homology 2 domain-containing
protein / FH2 domain-containing protein common family
members: At2g43800, At3g25500, At5g48360, At4g15200,
At3g05470, At3g07540, At5g07780, At5g07650 [Arabidopsis
thaliana];
Length = 488
Score = 35.1 bits (77), Expect = 0.041
Identities = 24/81 (29%), Positives = 39/81 (48%)
Frame = +3
Query: 258 KAAQNLSILLGGSLKHMSYSHIRTCVLRCDTTVLTGNVLDLLIQYLPPADQMKKLAELKG 437
K A N I+L S + + + VL D +V+ + +D LI++ P ++ + L G
Sbjct: 162 KRAYNCEIML--SKVKIPLPDLMSSVLALDESVIDVDQVDNLIKFCPTKEEAELLKGFIG 219
Query: 438 NSEELTEAEQFAATVADVKRL 500
N E L EQF + V R+
Sbjct: 220 NKETLGRCEQFFLELLKVPRV 240
>At2g25050.1 68415.m02996 formin homology 2 domain-containing protein
/ FH2 domain-containing protein contains formin homology
2 domain, Pfam:PF02128
Length = 1111
Score = 34.7 bits (76), Expect = 0.054
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = +3
Query: 258 KAAQNLSILLGGSLKHMSYSHIRTCVLRCDTTVLTGNVLDLLIQYLPPADQMKKLAELKG 437
+ A N I+L S + + + VL D +V+ + +D LI++ P ++ + L G
Sbjct: 786 RRAYNCEIML--SKVKIPLPDLMSSVLALDESVIDVDQVDNLIKFCPTKEEAELLKGFTG 843
Query: 438 NSEELTEAEQFAATVADVKRL 500
N E L EQF + V R+
Sbjct: 844 NKETLGRCEQFFLELLKVPRV 864
>At5g02410.1 68418.m00164 DIE2/ALG10 family contains Pfam PF04922:
DIE2/ALG10 family
Length = 509
Score = 34.3 bits (75), Expect = 0.071
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = -3
Query: 215 ALSTASSVFLATGLLENFCDKPLRMSGDANLSSCTLTQNAFSDIFCGVIVFQLARFNGPS 36
+L+ +S+F L+EN +A +S + NA S + CGV+V+++ RF GP+
Sbjct: 64 SLAHVASLFPGMLLMENTSQS----FSEACSTSVLRSTNAVSAVLCGVLVYEIIRFLGPN 119
Query: 35 TS 30
S
Sbjct: 120 LS 121
>At1g31810.1 68414.m03904 formin homology 2 domain-containing protein
/ FH2 domain-containing protein low similarity to
SP|P48608 Diaphanous protein {Drosophila melanogaster};
contains Pfam profile PF02181: Formin Homology 2(FH2)
Domain
Length = 1201
Score = 30.7 bits (66), Expect = 0.88
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 503 AQLRSLAFREHYAEIISEIKPDIVSGTAACEEVKSSRKFAKILGALVLL 649
A+LR F+ +A + E+K + + AA +EVK S K +I+ ++ L
Sbjct: 942 AKLRVFGFKITFASQVEELKSCLNTINAATKEVKESAKLRQIMQTILTL 990
>At5g07770.1 68418.m00889 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 722
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +2
Query: 503 AQLRSLAFREHYAEIISEIKPDIVSGTAACEEVKSSRKFAKILGALVLL 649
A+LR L+F+ + I++ + + +ACEEV+SS+ +I+ ++ L
Sbjct: 335 AKLRVLSFKIPFGTKITKFRKMLNVVNSACEEVRSSQMLKEIMKIILFL 383
>At3g05470.1 68416.m00599 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 884
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +2
Query: 515 SLAFREHYAEIISEIKPDIVSGTAACEEVKSSRKFAKILGALV 643
++ +RE + + + ++ AC+E+KSSR F K+L A++
Sbjct: 618 AMLYRETFEDEVVHLRNSFSMLEEACKELKSSRLFLKLLEAVL 660
>At5g07780.1 68418.m00890 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 464
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/49 (24%), Positives = 30/49 (61%)
Frame = +2
Query: 503 AQLRSLAFREHYAEIISEIKPDIVSGTAACEEVKSSRKFAKILGALVLL 649
++LR +F+ + I+++ + + +ACEE+++S+K I+ ++ L
Sbjct: 229 SKLRVFSFKIQFGTQITKLTKGLNAVNSACEEIRTSQKLKDIMENILCL 277
>At4g24390.2 68417.m03498 F-box family protein (FBX14) similar to
transport inhibitor response 1 protein GI:8777429 from
[Arabidopsis thaliana]
Length = 623
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 202 HLRSSWRPVCLRTSAISRSGCRGMPICLP 116
H S+ R V L + ISR GCRG+ LP
Sbjct: 549 HRYSNMRFVWLSSCLISRGGCRGVSHALP 577
>At4g24390.1 68417.m03497 F-box family protein (FBX14) similar to
transport inhibitor response 1 protein GI:8777429 from
[Arabidopsis thaliana]
Length = 623
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 202 HLRSSWRPVCLRTSAISRSGCRGMPICLP 116
H S+ R V L + ISR GCRG+ LP
Sbjct: 549 HRYSNMRFVWLSSCLISRGGCRGVSHALP 577
>At3g49150.1 68416.m05372 F-box family protein contains F-box domain
Pfam:PF00646
Length = 590
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 176 LLENFCDKPLRMSGDANLSSCTLTQNAFSDIFC 78
+ ENF D+ L + GD ++ +LT F+D C
Sbjct: 77 IFENFVDRVLSLQGDYPINKFSLTCRDFTDPTC 109
>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|Q03468 Excision
repair protein ERCC-6 (Cockayne syndrome protein CSB)
{Homo sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1187
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 362 GEHGGVAAQHACAYVRVRHVLERAAEQDRQVLG 264
G H G A QHA A R+R + +R + ++++ G
Sbjct: 103 GLHSGSALQHALATDRLRSLKKRKIQLEKELTG 135
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,770,347
Number of Sequences: 28952
Number of extensions: 236285
Number of successful extensions: 829
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -