Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--1465
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   7.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.9  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 582 HFCK*CYKNELCSVSCIKKS 523
           HF    +K E CS SC+ KS
Sbjct: 11  HFGSKPFKCEKCSYSCVNKS 30


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 481  CFDCGALKMYSTYKCYT 431
            CFD    ++Y  Y CY+
Sbjct: 1057 CFDSDRERLYDCYVCYS 1073


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 37  LPFNYRSFRLINRKVLQLI 93
           L FN  +FR++N  V QLI
Sbjct: 388 LNFNEVNFRILNAPVNQLI 406


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 306  LTIDLKLRQT*HLPIHKCTAHY 371
            LT+ ++   T + PIH  T HY
Sbjct: 1382 LTMKVRPHPTDNAPIHGYTIHY 1403


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 567 CYKNELCSVSCIKKSNTDFMNCD*FIAMNVS 475
           C KN+ CS+  I ++   +      IA+ +S
Sbjct: 55  CTKNQQCSILRINRNRCQYCRLKKCIAVGMS 85


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 567 CYKNELCSVSCIKKSNTDFMNCD*FIAMNVS 475
           C KN+ CS+  I ++   +      IA+ +S
Sbjct: 104 CTKNQQCSILRINRNRCQYCRLKKCIAVGMS 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,526
Number of Sequences: 438
Number of extensions: 3145
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)