Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1464
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 215 4e-57
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 123 2e-29
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 111 7e-26
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 93 4e-20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 64 2e-11
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 3e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 56 3e-09
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 44 1e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 29 0.51
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac... 27 2.7
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 26 3.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 4.8
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.8
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 8.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 215 bits (525), Expect = 4e-57
Identities = 101/119 (84%), Positives = 105/119 (88%)
Frame = +2
Query: 236 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 415
G+ G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELR
Sbjct: 36 GRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR 95
Query: 416 VAPEEHPVLLTEAPLNPKANREKMTQIMFETSTRPPCTFAIQAVLSLYASRRTTGIVLD 592
VAPEEHP LLTEAPLNPK+NREKMTQI+FET P AIQAVLSLYAS RTTGIVLD
Sbjct: 96 VAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLD 154
Score = 84.2 bits (199), Expect = 1e-17
Identities = 36/39 (92%), Positives = 39/39 (100%)
Frame = +3
Query: 135 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 251
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 40
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 123 bits (297), Expect = 2e-29
Identities = 59/120 (49%), Positives = 81/120 (67%), Gaps = 1/120 (0%)
Frame = +2
Query: 236 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-L 412
G+ VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L
Sbjct: 40 GRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQL 99
Query: 413 RVAPEEHPVLLTEAPLNPKANREKMTQIMFETSTRPPCTFAIQAVLSLYASRRTTGIVLD 592
PEEHP+LLTE PL N+EK+ + +ET P +F++Q VL+LYAS RTTGIVL+
Sbjct: 100 NTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLE 159
Score = 52.4 bits (120), Expect = 5e-08
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +3
Query: 153 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 254
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 111 bits (267), Expect = 7e-26
Identities = 50/105 (47%), Positives = 75/105 (71%)
Frame = +2
Query: 278 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 457
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 458 LNPKANREKMTQIMFETSTRPPCTFAIQAVLSLYASRRTTGIVLD 592
+NP ANREKM + MFE AIQAVLSLYA ++G+V+D
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVD 154
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +3
Query: 141 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 245
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 92.7 bits (220), Expect = 4e-20
Identities = 44/96 (45%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Frame = +2
Query: 281 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 457
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 458 LNPKANREKMTQIMFETSTRPPCTFAIQAVLSLYAS 565
LNP NRE +IMFE+ A+QAVL+L AS
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAAS 168
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +3
Query: 153 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 236
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 63.7 bits (148), Expect = 2e-11
Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Frame = +2
Query: 269 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 445
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 446 TEAPLNPKANREKMTQIMFETSTRPPCTFAIQAVLSLYASRR--TTGIVLD 592
TE NP R MT+++FE P + I + S Y + + ++GIVL+
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLN 171
Score = 35.9 bits (79), Expect = 0.004
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 153 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 248
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 62.9 bits (146), Expect = 3e-11
Identities = 31/90 (34%), Positives = 47/90 (52%)
Frame = +2
Query: 323 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 502
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 503 ETSTRPPCTFAIQAVLSLYASRRTTGIVLD 592
E+ P A Q + +AS + T ++D
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVD 152
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 138 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 239
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 56.4 bits (130), Expect = 3e-09
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Frame = +2
Query: 254 GVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 427
GV + ++ YV DE Q I + +K +GI+ +W+ W +L+V P
Sbjct: 41 GVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPT 100
Query: 428 EHPVLLTEAPLNPKANREKMTQIMFETSTRPPCTFAIQAVLSLYASRRTTGIVLD 592
E+ +++TE NP++ R+++ + FE P QAV +A+ ++T +++D
Sbjct: 101 EYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVD 155
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 138 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 239
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 44.4 bits (100), Expect = 1e-05
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +2
Query: 338 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 505
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 506 TSTRPPCTFAIQAVLSLYASRRTTGIVLD 592
P T A + ++ LYA G+V+D
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVID 200
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.1 bits (62), Expect = 0.51
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 398 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETSTRPP 523
+Y L E+HP+LLT+ A L P+ + ++ +I FE S P
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRI-FEKSENTP 1441
>SPAC11D3.03c |||meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = +1
Query: 433 PRPAY*GSPQPQGQQREDDPDHVRNINTP----AMYVCHPSRALAVRVP 567
P PAY P P D + R N P +VC P LAV++P
Sbjct: 24 PLPAY--YPHPGSPLYADKELYARIANAPKKLVGRHVCQPRTGLAVKIP 70
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +2
Query: 446 TEAPLNPKANREKMTQIMFETSTRPPCTFAIQAVLSLYASRR 571
+E PL+P+ + + S C I+ ++SLY+ +
Sbjct: 108 SEKPLSPEKISTMLQHLQMRLSIEQQCVSGIEKIMSLYSKEQ 149
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 180 TYRSHCLLPTRQLLRRTS*ISEI 112
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 457 PQPQGQQREDD---PDHVRNINTPAMYVCHPSRALAVRVPSYHRYR 585
PQ Q R D ++ R +N V P+ LA+R S+ RY+
Sbjct: 176 PQSQDDNRVSDIRQMENRRELNVKRRSVSSPAEDLAIRPLSFSRYK 221
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 334 FEGQDTSFALCLISYIRVLLSHTDHHA 254
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 257 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 343
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,987
Number of Sequences: 5004
Number of extensions: 56351
Number of successful extensions: 148
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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