Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1464
(595 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 222 1e-58
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 222 1e-58
SB_56| Best HMM Match : Actin (HMM E-Value=0) 222 1e-58
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 222 1e-58
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 222 1e-58
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 9e-25
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 2e-22
SB_54| Best HMM Match : Actin (HMM E-Value=0) 89 2e-18
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 77 8e-15
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 66 3e-11
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 2e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 48 8e-06
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 44 9e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.057
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 34 0.075
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.30
SB_27518| Best HMM Match : RWD (HMM E-Value=0.015) 32 0.40
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.53
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5) 29 2.1
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_47339| Best HMM Match : Rubredoxin (HMM E-Value=0.76) 28 4.9
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_21493| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_16360| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 27 8.6
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 222 bits (543), Expect = 1e-58
Identities = 105/119 (88%), Positives = 107/119 (89%)
Frame = +2
Query: 236 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 415
G+ GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 96
Query: 416 VAPEEHPVLLTEAPLNPKANREKMTQIMFETSTRPPCTFAIQAVLSLYASRRTTGIVLD 592
VAPEEHPVLLTEAPLNPKANREKMTQIMFET P AIQAVLSLYAS RTTGIV+D
Sbjct: 97 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 155
Score = 87.4 bits (207), Expect = 8e-18
Identities = 39/42 (92%), Positives = 41/42 (97%)
Frame = +3
Query: 129 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 254
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 42
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 222 bits (543), Expect = 1e-58
Identities = 105/119 (88%), Positives = 107/119 (89%)
Frame = +2
Query: 236 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 415
G+ GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 95
Query: 416 VAPEEHPVLLTEAPLNPKANREKMTQIMFETSTRPPCTFAIQAVLSLYASRRTTGIVLD 592
VAPEEHPVLLTEAPLNPKANREKMTQIMFET P AIQAVLSLYAS RTTGIV+D
Sbjct: 96 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 154
Score = 84.6 bits (200), Expect = 5e-17
Identities = 37/40 (92%), Positives = 40/40 (100%)
Frame = +3
Query: 135 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 254
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 41
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 222 bits (543), Expect = 1e-58
Identities = 105/119 (88%), Positives = 107/119 (89%)
Frame = +2
Query: 236 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 415
G+ GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 95
Query: 416 VAPEEHPVLLTEAPLNPKANREKMTQIMFETSTRPPCTFAIQAVLSLYASRRTTGIVLD 592
VAPEEHPVLLTEAPLNPKANREKMTQIMFET P AIQAVLSLYAS RTTGIV+D
Sbjct: 96 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 154
Score = 85.8 bits (203), Expect = 2e-17
Identities = 38/40 (95%), Positives = 40/40 (100%)
Frame = +3
Query: 135 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 254
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 41
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 222 bits (543), Expect = 1e-58
Identities = 105/119 (88%), Positives = 107/119 (89%)
Frame = +2
Query: 236 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 415
G+ GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 96
Query: 416 VAPEEHPVLLTEAPLNPKANREKMTQIMFETSTRPPCTFAIQAVLSLYASRRTTGIVLD 592
VAPEEHPVLLTEAPLNPKANREKMTQIMFET P AIQAVLSLYAS RTTGIV+D
Sbjct: 97 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 155
Score = 91.9 bits (218), Expect = 4e-19
Identities = 40/42 (95%), Positives = 42/42 (100%)
Frame = +3
Query: 129 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 254
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 42
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 222 bits (543), Expect = 1e-58
Identities = 105/119 (88%), Positives = 107/119 (89%)
Frame = +2
Query: 236 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 415
G+ GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 96
Query: 416 VAPEEHPVLLTEAPLNPKANREKMTQIMFETSTRPPCTFAIQAVLSLYASRRTTGIVLD 592
VAPEEHPVLLTEAPLNPKANREKMTQIMFET P AIQAVLSLYAS RTTGIV+D
Sbjct: 97 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 155
Score = 87.4 bits (207), Expect = 8e-18
Identities = 37/42 (88%), Positives = 41/42 (97%)
Frame = +3
Query: 129 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 254
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 42
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 110 bits (264), Expect = 9e-25
Identities = 53/106 (50%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Frame = +2
Query: 278 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEA 454
KD VGDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE
Sbjct: 53 KDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEP 112
Query: 455 PLNPKANREKMTQIMFETSTRPPCTFAIQAVLSLYASRRTTGIVLD 592
PLNP NREKM ++MFE AIQAVL+LYA TG+V+D
Sbjct: 113 PLNPMKNREKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVID 158
Score = 44.4 bits (100), Expect = 7e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +3
Query: 147 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 245
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 102 bits (245), Expect = 2e-22
Identities = 47/55 (85%), Positives = 48/55 (87%)
Frame = +2
Query: 236 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 400
G+ GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/40 (92%), Positives = 40/40 (100%)
Frame = +3
Query: 135 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 254
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 41
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/40 (65%), Positives = 29/40 (72%)
Frame = +2
Query: 473 NREKMTQIMFETSTRPPCTFAIQAVLSLYASRRTTGIVLD 592
N + M +IMFET P AIQAVLSLYAS RTTGIV+D
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 117
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 89.4 bits (212), Expect = 2e-18
Identities = 43/71 (60%), Positives = 53/71 (74%)
Frame = +2
Query: 380 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETSTRPPCTFAIQAVLSLY 559
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+ P A+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 560 ASRRTTGIVLD 592
AS RTTG V D
Sbjct: 2189 ASGRTTGTVFD 2199
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 153 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 254
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 77.4 bits (182), Expect = 8e-15
Identities = 35/55 (63%), Positives = 43/55 (78%)
Frame = +2
Query: 428 EHPVLLTEAPLNPKANREKMTQIMFETSTRPPCTFAIQAVLSLYASRRTTGIVLD 592
+HPVLLTEAPLNP+ NREK ++ FET P ++QAVLSLYA+ RTTG+VLD
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLD 180
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/85 (34%), Positives = 51/85 (60%)
Frame = +2
Query: 338 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETSTR 517
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 518 PPCTFAIQAVLSLYASRRTTGIVLD 592
P +VL+ +A+ R+ G+V+D
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVID 87
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +3
Query: 138 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 254
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +2
Query: 266 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 445
G+ D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 47.6 bits (108), Expect = 8e-06
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +3
Query: 123 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 248
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQ 734
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/33 (66%), Positives = 23/33 (69%)
Frame = +2
Query: 494 IMFETSTRPPCTFAIQAVLSLYASRRTTGIVLD 592
IMFE P AIQAVLSLYAS RTTG+V D
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFD 33
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -3
Query: 251 MAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFV 135
MA + D G++ + SI+S E GLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 34.3 bits (75), Expect = 0.075
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 287 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 409
++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 141 EVAALVVDNGSGMCKAGFAGDDAPRAV 221
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 33.1 bits (72), Expect = 0.17
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = -1
Query: 343 DGVFEGQDTSFALCLISYIRVLLSHTDHHA*WRGLPTIEGNTARGASSPAKPALHIPEPL 164
DG F+L L + IR ++ + W GNT R PAKPAL++P P
Sbjct: 41 DGEMRAILNDFSLPLDAKIRHYNRVSNQYLKWLQQLKDGGNTNRRTRIPAKPALNLPSPP 100
Query: 163 STT 155
S T
Sbjct: 101 SKT 103
>SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 32.7 bits (71), Expect = 0.23
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 122 LVKLVRCRCDKMKIKRPAVTANREKQIPIAGRCPCSTQC 6
L++L C C+K + KR + + Q+P C C C
Sbjct: 620 LLELTTCSCEKSRCKRDDLCPCKSNQMPCTEACQCMNTC 658
>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 134 AHLELVKLVRCRCDKMKIKRPAVTANREKQIPIAGRCPCSTQ 9
A L L+KL CRC K +R + + + IP C C+++
Sbjct: 1296 APLSLLKLTTCRCVKTACRRDDLCSCKANDIPCTEACLCTSE 1337
>SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)
Length = 277
Score = 31.9 bits (69), Expect = 0.40
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 528 RLPSKPCSRCTRPVVPP 578
R P++PCS CT+P +PP
Sbjct: 218 RYPTEPCSLCTKPALPP 234
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 329 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 481
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 226 GNTARGASSPAKPALHIPEPLSTT 155
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 226 GNTARGASSPAKPALHIPEPLSTT 155
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5)
Length = 554
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 220 CFPRSWEGPAIRRDGRYGTEGLLCR 294
C PR W P +R+GR T L CR
Sbjct: 274 CAPRQWLEPTEKREGREVTNKLRCR 298
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = -3
Query: 227 GKHCARSIISCEAGLAHTGAIVYYQRGNFFVAHLELVKLVRCRCD 93
G+HC + I C G GA GN+ E C D
Sbjct: 724 GRHCEKDIDECSLGYCKNGATCTNTPGNYSCQCTEFTNGTNCELD 768
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -1
Query: 343 DGVFEGQDTSFALCLISYIRVLLSHTDHHA*WRGLPTIEGNTARGASSPAKPALHIPEPL 164
DG +L L + IR+ ++ + W GNT R PAKP L IP P
Sbjct: 29 DGEMRAILNDSSLPLDAQIRLYNRVSNQYLKWLKQVKDGGNTNRRTRIPAKPTLTIPSPP 88
Query: 163 STT 155
+ T
Sbjct: 89 TKT 91
>SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1181
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = -3
Query: 290 HKSPSVPYRPSRLMAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFVAHLELVKL 111
++S +P R S+ M G HD ++ I+ AGL YY+ + + +L+K
Sbjct: 326 NQSVVIPRRSSKKMEG-LHDMNQYLNTEIVCTLAGLGCAEGTEYYKSPDCLESLKDLIKF 384
Query: 110 VRCRCDKMKIKR 75
+R +I+R
Sbjct: 385 LRRDDSTCEIRR 396
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 226 GNTARGASSPAKPALHIPEPLSTT 155
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_47339| Best HMM Match : Rubredoxin (HMM E-Value=0.76)
Length = 730
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 348 CSMGYLRVRIPLL-LCASSPT*ESFCPIPTITPDGGAFPRSRETLREEHHLLRSRPCTYR 172
C+ GY + P LC S C +P + PD P + HH RS+ C +
Sbjct: 270 CNKGYSSPQHPCDGLCRSCGV--VGCSLPVVGPDDQVQPWDWRDCPDYHHYFRSQTC-WE 326
Query: 171 SHCLLPTR 148
+H ++ +R
Sbjct: 327 AHRVVKSR 334
>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = -2
Query: 348 CSMGYLRVRIPLL-LCASSPT*ESFCPIPTITPDGGAFPRSRETLREEHHLLRSRPCTYR 172
C+ GY + P LC S C +P + PD P + HH RS+ C +
Sbjct: 508 CNKGYSSPQHPCDGLCRSCGV--VGCSLPVVGPDDQVQPWDWRDCPDYHHYFRSQTC-WE 564
Query: 171 SHCLLPTR 148
+H ++ +R
Sbjct: 565 AHRVVKSR 572
>SB_21493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 306
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Frame = -2
Query: 588 STIPVVRRDAYSESTAWMANVHGGRV--DVSNMIWV--IFSLLALGLRGASV-SRTGC 430
+T+P+ + S+ST W+ +HG + + N ++ I S L L+ A++ + GC
Sbjct: 2 TTLPISKHAKTSQSTDWITQIHGSHLTRSLDNFFFIVEIQSRHLLALKTANILGQYGC 59
>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1626
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 454 SPQPQGQQREDDPDHVRNINTPAMYVCHP 540
+P D RN+NTP M CHP
Sbjct: 820 TPSLDNVSEVDSKKSARNLNTPVMGNCHP 848
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 241 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 131
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_16360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 379
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 273 PIPTITPDGGAFPRSRETLREEHHLLRSRPCTYRSHCLLPTRQLL 139
P P + P+ G FP + +E H L C Y + LLP Q++
Sbjct: 92 PSPDVVPNAGQFPNAEG--QEVHFLCTGPMCRY-AEDLLPLLQIM 133
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 246 GAFPRSRETLREEHHLLRSRPCTYRS 169
G +P S++T R E + +RPCT S
Sbjct: 832 GCYPWSKQTFRHEGPPISARPCTAMS 857
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,579,498
Number of Sequences: 59808
Number of extensions: 512583
Number of successful extensions: 1366
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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