Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1463
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 27 1.6
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 27 2.1
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 27 2.8
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 3.7
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 3.7
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 26 4.9
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 6.5
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 6.5
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 8.6
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 25 8.6
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 402 SACWAGASMGSLRM*LKVALNGRPVLIHKNMSVPRLLPDVQK 277
+A WA S L+ L+ A+N +P+ K+ S +P +QK
Sbjct: 349 TAAWAKLSPSVLQERLRAAVNQQPLDALKSSSTQTSIPKIQK 390
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 150 ELNYFLSYQYCRSLG-LQLASFETKEKADSITTYLTMQAITNMTSGHRV 293
ELN S+ SL L + + K+D + +++ MQ ++N+ + HR+
Sbjct: 96 ELNLSTSFYDPSSLNTFALTTEDRSRKSDFLNSFVLMQTVSNIVNLHRL 144
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 385 SIDGQSPHVVKSRVKWQTGAHPQ--KHVCAEVITRCPEVI 272
SIDG HVV+ W G H Q + V A ++ PEVI
Sbjct: 570 SIDGGYGHVVEDEKAW--GRHDQVPRQVFASMLNLPPEVI 607
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 422 DVPQGSTAPQRTARHGRYSRTEHVMTNGCSRSK-LRPSTGSLN 547
D P A T RH Y+ + H T+G SRS L PST ++
Sbjct: 368 DTPDSVLANSPTPRHLPYTWSRH-STSGPSRSTVLNPSTSRMS 409
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 430 WYV*RVHAIISVLGRSIDGQS 368
WYV R HA ISV +S DG +
Sbjct: 55 WYVNRRHAPISVYFKSTDGHT 75
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 312 MSVPRLLPDVQKSYLL*PALLDKSLSNLPSPSSRTMPV 199
+S+P P S L + + +S++N P P+S+ P+
Sbjct: 41 VSIPTPKPSTPLSTLTNGSTIQQSMTNQPEPTSQVPPI 78
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 368 RLPIDAPAQHADDSMDPLDVPQGSTAPQRT 457
RLP D P DD++ L S APQ T
Sbjct: 253 RLPHDPPDLEGDDNIPDLPKRPASIAPQPT 282
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 416 PLDVPQGSTAPQRTARHGRYSRTEHVMTNG 505
P D PQGS+ P T +S H T+G
Sbjct: 18 PYDPPQGSSRPFFTVLKRAFSSVLHPFTSG 47
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 198 QLASFETKEKADSITTYLTMQAITNMTSGHRVITSAQTCFCG 323
++A+ T+E S+ ++ +I N+T G I S T F G
Sbjct: 196 EMAAQVTRENISSLDPAISAASIGNVTFGQPNIPSTTTDFAG 237
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = -3
Query: 403 ISVLGRSIDGQSPHVVKSRVKWQTG 329
I +G +D P K KWQTG
Sbjct: 59 IPFMGSFLDSMKPTFEKYNAKWQTG 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,401
Number of Sequences: 5004
Number of extensions: 53839
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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