Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--1463
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0187 + 21433842-21433887,21434504-21435246,21435437-214354... 30 1.6
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 29 2.9
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 29 3.8
06_03_0523 - 21734045-21734301,21734452-21734578 28 5.0
05_04_0039 + 17421826-17421966,17422105-17422168,17422562-174226... 28 5.0
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891... 28 6.6
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 27 8.7
02_01_0655 + 4867737-4868642 27 8.7
>09_06_0187 +
21433842-21433887,21434504-21435246,21435437-21435484,
21435929-21436814,21436967-21437056,21437543-21438417
Length = 895
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 120 FISRMNPYSPELNYFLSYQYCR 185
FI R+ +SP++ YF SY+Y R
Sbjct: 190 FIGRLPEWSPDVRYFTSYEYPR 211
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 188 IRSSTGIVRDEGEGRFDNDLSNNAGYNK 271
+RSS IV D G+GR + D+ AG ++
Sbjct: 163 VRSSINIVGDLGDGRVERDVREEAGVDR 190
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 383 APAQHADDSMDPLDVPQGSTAPQRTARH 466
AP++HA S P P ++AP + RH
Sbjct: 79 APSRHATPSSSPPSTPSSASAPPPSGRH 106
>06_03_0523 - 21734045-21734301,21734452-21734578
Length = 127
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 371 LPIDAPAQHADDSMDPLDVPQGSTAPQRTARHGRYSRT 484
LP AP Q A M+PL + + AP R RH R+ T
Sbjct: 75 LPTGAPPQPAQ--MEPLGARRRTRAPPRRLRHRRHPLT 110
>05_04_0039 +
17421826-17421966,17422105-17422168,17422562-17422620,
17423410-17423536,17425029-17425116,17425196-17425451,
17425565-17425680,17426232-17426328,17426636-17426771,
17426892-17426979,17427133-17427367
Length = 468
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/102 (25%), Positives = 41/102 (40%)
Frame = +2
Query: 164 PVLSVLQIIRSSTGIVRDEGEGRFDNDLSNNAGYNKYDFWTSGNNLGTDMFLWMSTGLPF 343
P L +LQ + SS RD+ F +D + AG + Y + G +W
Sbjct: 15 PWLLLLQGV-SSLQFTRDD----FPHDFAFGAGTSAYQYEGGAAEDGRTPSIW------- 62
Query: 344 NATFNYMRRLPIDAPAQHADDSMDPLDVPQGSTAPQRTARHG 469
T+ + R P D A D +P+G+ PQ ++ G
Sbjct: 63 -DTYTHSGRHPEDETGDVASDGYHKYKLPKGAIVPQLMSKEG 103
>08_02_0269 +
15087481-15087893,15087978-15088074,15089068-15089112,
15089281-15089492,15090809-15090911,15091002-15091097,
15091405-15091473,15093341-15093588,15093640-15093759,
15093847-15094284,15094503-15094620,15095262-15095303,
15097099-15097161,15097365-15097475,15097730-15097801,
15097875-15097993,15099682-15099745,15100238-15101860
Length = 1350
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +2
Query: 242 DLSNNAGYNKYDFWTSGNNLGTDMFLWMS---TGLPFNATFNYMRRLPIDAPAQHADDSM 412
D+S + YD + NNL D W++ LP + LP+D A A+ +
Sbjct: 709 DVSKGCNFKNYDLFQHKNNLCFDESNWVTMQPKDLPHGLNLVMVLDLPLDIQAVSANKFV 768
Query: 413 D 415
D
Sbjct: 769 D 769
>11_06_0425 -
23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 465 CRAVRCGAVLPCGTSRGSMLSSACWAGASMG 373
C+A RC AV G G S+ C +G G
Sbjct: 706 CKAARCKAVAASGGGGGQAESAGCGSGCGGG 736
>02_01_0655 + 4867737-4868642
Length = 301
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 471 RPCRAVRCGAVLPCGTSRGSMLSSACWAGASMGSL 367
RPC+ V G P G+ R + C +G+ G +
Sbjct: 123 RPCKRVSPGPGSPTGSERSELSHGGCGSGSGGGQV 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,521,242
Number of Sequences: 37544
Number of extensions: 396956
Number of successful extensions: 1031
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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